Factsheet for PGSC0003DMT400064699

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3
golgi 3
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus, plasma membrane
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT5G39670.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT5G39670.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT5G39670.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT5G39670.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT5G39670.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT5G39670.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT5G39670.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT5G39670.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT5G39670.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT5G39670.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT5G39670.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT5G39670.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT5G39670.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT5G39670.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT5G39670.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT5G39670.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT5G39670.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT5G39670.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT5G39670.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT5G39670.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT5G39670.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT5G39670.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067220.2.1	Tomato	extracellular	54.4	75.0
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	55.44	57.22
CDY20005	Canola	cytosol	24.87	45.71
Bra039037.1-P	Field mustard	cytosol	24.87	45.71
CDY30262	Canola	cytosol	22.8	41.12
CDX74438	Canola	cytosol	22.8	41.12
VIT_14s0108g01000.t01	Wine grape	cytosol	30.57	37.82
PGSC0003DMT400086481	Potato	cytosol	16.06	34.83
KRH40081	Soybean	cytosol	36.79	34.3
KRH01190	Soybean	cytosol, nucleus, vacuole	36.27	33.82
CDX85236	Canola	endoplasmic reticulum, extracellular	32.64	33.51
CDY66024	Canola	endoplasmic reticulum, extracellular	31.61	33.15
AT3G29000.1	Thale cress	endoplasmic reticulum	32.64	32.47
CDY37011	Canola	plastid	32.12	32.12
KRH16684	Soybean	cytosol	32.12	32.12
Bra033077.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion, plastid	30.57	31.72
Bra028438.1-P	Field mustard	plastid	32.12	31.63
CDX67435	Canola	plastid	32.12	31.63
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	30.05	31.02
Bra025654.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	30.05	30.85
CDY15945	Canola	plastid	31.09	30.61
Bra030349.1-P	Field mustard	endoplasmic reticulum, plastid	29.02	30.27
AT5G39670.1	Thale cress	plastid	31.61	29.9
CDX99659	Canola	extracellular	25.91	28.25
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	29.02	28.14
PGSC0003DMT400044026	Potato	cytosol, plastid	25.91	26.88
PGSC0003DMT400050271	Potato	cytosol	25.39	23.67

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102600322	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR002048	UniProt:M1CCR3	PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400025131	PGSC:PGSC0003DMG400025131	EnsemblPlants:PGSC0003DMT400064699
PRINTS:PR01697	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45512	PANTHER:PTHR45512:SF1	SMART:SM00054
SUPFAM:SSF47473	TMHMM:TMhelix	UniParc:UPI000294FD96	RefSeq:XP_006363405.1	SEG:seg	:

Description

Calcium-binding EF hand family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025131]

Coordinates

chr2:-:25570056..25570855

Molecular Weight (calculated)

22203.2 Da

IEP (calculated)

4.207

GRAVY (calculated)

-0.346

Length

193 amino acids

Sequence
(BLAST)

001: MAASTYLNRF SIKKLPVTTV PVPLVIHGLV GFFLLYIIFD WGRKFLNFLS QSQKSKSEKG NHNTSHNVPY LLVDGSLCRD EVENIMGKLG IFCNPEGDKL
101: YHERFDSDNF RDLFGDEEEE DNNDSNIMQE LGEAFDVFDE NRDGFIDEME LQKVLCALGF KEAAELENCR KMILTFDENG DGKIDFEEFV EMI

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.