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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 2
  • endoplasmic reticulum 2
  • plasma membrane 2
  • nucleus 1
  • extracellular 1
  • vacuole 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plasma membrane
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44416 Canola cytosol, endoplasmic reticulum, mitochondrion, plastid 98.92 98.4
Bra039037.1-P Field mustard cytosol 44.62 79.05
AT3G29000.1 Thale cress endoplasmic reticulum 60.75 58.25
Bra028438.1-P Field mustard plastid 54.84 52.04
Bra030349.1-P Field mustard endoplasmic reticulum, plastid 50.0 50.27
Bra025654.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 50.0 49.47
VIT_14s0108g01000.t01 Wine grape cytosol 37.63 44.87
KRH40081 Soybean cytosol 43.55 39.13
Bra030632.1-P Field mustard cytosol 17.2 39.02
Bra032444.1-P Field mustard cytosol 15.05 38.89
KRH01190 Soybean cytosol, nucleus, vacuole 43.01 38.65
Bra000299.1-P Field mustard cytosol 13.98 36.11
Solyc02g067220.2.1 Tomato extracellular 25.81 34.29
KRH16684 Soybean cytosol 33.33 32.12
Solyc02g088090.1.1 Tomato extracellular, golgi 30.11 30.94
PGSC0003DMT400064699 Potato golgi 31.72 30.57
PGSC0003DMT400003364 Potato endoplasmic reticulum, golgi 30.11 29.95
Protein Annotations
Gene3D:1.10.238.10MapMan:35.1EnsemblPlantsGene:Bra033077EnsemblPlants:Bra033077.1EnsemblPlants:Bra033077.1-PInterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domGO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0005575
GO:GO:0016020GO:GO:0016021InterPro:IPR002048UniProt:M4EW93PFAM:PF13499ScanProsite:PS00018
PFscan:PS50222PANTHER:PTHR45512PANTHER:PTHR45512:SF1SMART:SM00054SUPFAM:SSF47473TMHMM:TMhelix
UniParc:UPI0002546E5A:::::
Description
AT5G39670 (E=2e-054) | calcium-binding EF hand family protein
Coordinates
chrA02:-:21525045..21525605
Molecular Weight (calculated)
21791.7 Da
IEP (calculated)
4.876
GRAVY (calculated)
-0.476
Length
186 amino acids
Sequence
(BLAST)
001: MEKSFLSEYK RSSSLTFLAL FNLFLIKFGR WVSTTRIFLF RLFPLLQHQQ RVSHKHESLT KQGIEEEEEY DDLCRADIEM VMRTLGLSPD QESDKLQERY
101: SSKEISSLFE SNEASLEEVK QAFDVFDENR DGFIDATELQ RVLTHLGFKE GYFLGNCSAM LRSVHENKDG RIDFNGFVKF MENNSL
Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)
001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
Arabidopsis Description
CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.