Factsheet for Bra039037.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20005	Canola	cytosol	100.0	100.0
CDY66024	Canola	endoplasmic reticulum, extracellular	97.14	55.43
Bra033077.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion, plastid	79.05	44.62
AT3G29000.1	Thale cress	endoplasmic reticulum	78.1	42.27
Bra025654.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	74.29	41.49
Bra030632.1-P	Field mustard	cytosol	32.38	41.46
Bra000299.1-P	Field mustard	cytosol	27.62	40.28
Bra032444.1-P	Field mustard	cytosol	27.62	40.28
VIT_14s0108g01000.t01	Wine grape	cytosol	58.1	39.1
Bra028438.1-P	Field mustard	plastid	71.43	38.27
Bra030349.1-P	Field mustard	endoplasmic reticulum, plastid	65.71	37.3
KRH40081	Soybean	cytosol	66.67	33.82
KRH01190	Soybean	cytosol, nucleus, vacuole	65.71	33.33
Solyc02g067220.2.1	Tomato	extracellular	37.14	27.86
KRH16684	Soybean	cytosol	50.48	27.46
PGSC0003DMT400064699	Potato	golgi	45.71	24.87
Solyc02g088090.1.1	Tomato	extracellular, golgi	42.86	24.86
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	42.86	24.06

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EnsemblPlantsGene:Bra039037	EnsemblPlants:Bra039037.1	EnsemblPlants:Bra039037.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0046872
InterPro:IPR002048	UniProt:M4FD67	PFAM:PF13499	ScanProsite:PS00018	ScanProsite:PS00303	PFscan:PS50222
PANTHER:PTHR45512	PANTHER:PTHR45512:SF1	InterPro:S100/CaBP-9k_CS	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002541C16

Description

AT3G29000 (E=9e-041) | calcium-binding EF hand family protein

Coordinates

chrA09:+:1502361..1502678

Molecular Weight (calculated)

11970.0 Da

IEP (calculated)

4.005

GRAVY (calculated)

-0.449

Length

105 amino acids

Sequence
(BLAST)

001: MRSLGLSPDS ESDGLQERYS SKEISSLFEE KEASLEEVKQ AFDVFDENRD GFIDTTELQR VLTTLGFKEG SCVENCMVMI RSLDGNKDGI IDFNEFLKFM
101: ENSFC

Best Arabidopsis Sequence Match ( AT3G47480.1 )
(BLAST)

001: MEDSSLLSPI SLLTIVIFLF ILNLMMIIQD FSSSFPFRFH LFFSNAYILF TSIRNNKQNT ELPIIKKVVV PNRADIKTSV EEVKAIIDDS EALYECLIEE
101: GEEYLLEKNE MMGKEIVKEA FRLFDENQDG FIDENELKHV LSLLGYDECT KMECRKMVKV YDENRDGKID FYEFVKLIEK SFS

Arabidopsis Description

CML47Probable calcium-binding protein CML47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN89]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.