Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 3
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039037.1-P | Field mustard | cytosol | 55.43 | 97.14 |
| CDY20005 | Canola | cytosol | 55.43 | 97.14 |
| CDX85236 | Canola | endoplasmic reticulum, extracellular | 80.43 | 78.72 |
| CDX74438 | Canola | cytosol | 42.93 | 73.83 |
| CDY30262 | Canola | cytosol | 42.93 | 73.83 |
| CDY44416 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plastid | 72.83 | 71.66 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 65.22 | 61.86 |
| CDX67435 | Canola | plastid | 59.78 | 56.12 |
| CDY37011 | Canola | plastid | 58.7 | 55.96 |
| CDY15945 | Canola | plastid | 57.07 | 53.57 |
| CDX74439 | Canola | endoplasmic reticulum, extracellular, plastid, vacuole | 56.52 | 52.26 |
| CDX99659 | Canola | extracellular | 49.46 | 51.41 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 39.13 | 46.15 |
| CDY09997 | Canola | cytosol | 16.85 | 43.06 |
| CDY06192 | Canola | cytosol | 16.85 | 43.06 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 45.65 | 40.58 |
| KRH40081 | Soybean | cytosol | 45.65 | 40.58 |
| CDY28045 | Canola | cytosol | 17.93 | 39.29 |
| CDY35936 | Canola | cytosol | 17.93 | 39.29 |
| Solyc02g067220.2.1 | Tomato | extracellular | 26.63 | 35.0 |
| KRH16684 | Soybean | cytosol | 36.41 | 34.72 |
| CDY09996 | Canola | cytosol | 16.3 | 32.97 |
| Solyc02g088090.1.1 | Tomato | extracellular, golgi | 31.52 | 32.04 |
| PGSC0003DMT400064699 | Potato | golgi | 33.15 | 31.61 |
| PGSC0003DMT400003364 | Potato | endoplasmic reticulum, golgi | 30.98 | 30.48 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | GO:A0A078JH30 | UniProt:A0A078JH30 | EnsemblPlants:CDY66024 | ProteinID:CDY66024 |
| ProteinID:CDY66024.1 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00051192001 | InterPro:IPR002048 | PFAM:PF13499 | ScanProsite:PS00018 | ScanProsite:PS00303 | PFscan:PS50222 |
| PANTHER:PTHR45512 | PANTHER:PTHR45512:SF1 | InterPro:S100/CaBP-9k_CS | SMART:SM00054 | SUPFAM:SSF47473 | TMHMM:TMhelix |
| UniParc:UPI0004EAF57C | SEG:seg | : | : | : | : |
Description
BnaCnng49330DBnaCnng49330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JH30]
Coordinates
chrLK035049:+:2505..3116
Molecular Weight (calculated)
21425.2 Da
IEP (calculated)
4.212
GRAVY (calculated)
-0.330
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSFLSECK QSSSITFFAL FNLFLIGFCR WVSSARIFLS TFFPLLQHHQ RVEESLIKHI EEREEEEEDE LCREDAEIVM RSLGLSPDSE SDGLQERYSS
101: KEISSLFEEK EASLEEVKLA FDVFDENRDG FIDTTELQRV LTTLGFKEGS CLENCMVMIR SLDGNKDGRI DFNEFLKFME NSFC
101: KEISSLFEEK EASLEEVKLA FDVFDENRDG FIDTTELQRV LTTLGFKEGS CLENCMVMIR SLDGNKDGRI DFNEFLKFME NSFC
001: MESKSSSSSL PLFALFNFFL ISFCRWVSST RIFLSRFVPL LQHHQRVFDK KNNKDQQETL TKQEDDDDDD DDDDDDDDDD IDISREEAEM VMRSLGLFYN
101: DDQLQEQYSA KEVSSLFEEK EASLEEVKQA FDVFDENKDG FIDAIELQRV LTILGFKQGS YLDNCLVMIR SLDGNKDGKI DFNEFVKFME TSFY
101: DDQLQEQYSA KEVSSLFEEK EASLEEVKQA FDVFDENKDG FIDAIELQRV LTILGFKQGS YLDNCLVMIR SLDGNKDGKI DFNEFVKFME TSFY
Arabidopsis Description
CML45Probable calcium-binding protein CML30 [Source:UniProtKB/Swiss-Prot;Acc:Q9MBG5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.