CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, endoplasmic reticulum, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	CDX73678	AT3G51920.1	17360592
AT5G39670.1	CDX95314	AT3G51920.1	17360592
AT5G39670.1	CDY23174	AT3G51920.1	17360592
AT5G39670.1	CDY06478	AT4G14640.1	17360592
AT5G39670.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030349.1-P	Field mustard	endoplasmic reticulum, plastid	90.82	96.22
CDX99659	Canola	extracellular	78.06	86.44
CDY30262	Canola	cytosol	46.43	85.05
CDX74438	Canola	cytosol	46.43	85.05
CDY37011	Canola	plastid	79.59	80.83
CDX67435	Canola	plastid	80.1	80.1
CDY20005	Canola	cytosol	37.24	69.52
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	68.37	67.34
AT5G39670.1	Thale cress	plastid	69.9	67.16
CDY66024	Canola	endoplasmic reticulum, extracellular	53.57	57.07
CDX85236	Canola	endoplasmic reticulum, extracellular	53.57	55.85
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	49.49	51.87
VIT_14s0108g01000.t01	Wine grape	cytosol	36.73	46.15
CDY06192	Canola	cytosol	15.31	41.67
CDY09997	Canola	cytosol	15.31	41.67
KRH01190	Soybean	cytosol, nucleus, vacuole	43.37	41.06
KRH40081	Soybean	cytosol	43.37	41.06
CDY35936	Canola	cytosol	16.33	38.1
CDY28045	Canola	cytosol	16.33	38.1
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	34.18	35.83
KRH16684	Soybean	cytosol	35.2	35.75
Solyc02g067220.2.1	Tomato	extracellular	25.51	35.71
Solyc02g088090.1.1	Tomato	extracellular, golgi	32.14	34.81
CDY09996	Canola	cytosol	14.8	31.87
PGSC0003DMT400064699	Potato	golgi	30.61	31.09

Protein Annotations

EnsemblPlants:CDY15945	EnsemblPlantsGene:GSBRNA2T00090321001	Gene3D:1.10.238.10	GO:A0A078FNC8	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45512
PANTHER:PTHR45512:SF1	PFAM:PF13499	PFscan:PS50222	ProteinID:CDY15945	ProteinID:CDY15945.1	ScanProsite:PS00018
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EED5A3	UniProt:A0A078FNC8	MapMan:35.1	:

Description

BnaA04g11660DBnaA04g11660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNC8]

Coordinates

chrLK032059:+:676545..677135

Molecular Weight (calculated)

22465.8 Da

IEP (calculated)

4.596

GRAVY (calculated)

-0.226

Length

196 amino acids

Sequence
(BLAST)

001: MTVNHLYCLI TMEKSSLSQC QHSSAFPLFG LVDTFLNVFF RWVSFAQILF SRCCPLLQHQ QYVSEKKSKN LEVQSSITHD DGLCIEDAEM VMQSLGLITD
101: PESLGLQKRY TAEELSNLFE EKEPSLEEVK QAFDVFDENR DGFLDPVDLQ RVLTILGLKQ GSNLDNCRRM ISSFDGNKDG RIDFHGFVKF MENNLC

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.