CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

plastid 1
extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 5
vacuole 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20005	Canola	cytosol	48.94	87.62
CDY66024	Canola	endoplasmic reticulum, extracellular	78.72	80.43
CDX74438	Canola	cytosol	43.09	75.7
CDY30262	Canola	cytosol	43.09	75.7
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	73.4	73.8
AT3G29000.1	Thale cress	endoplasmic reticulum	69.15	67.01
CDY37011	Canola	plastid	59.57	58.03
CDX67435	Canola	plastid	59.57	57.14
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	57.45	54.27
CDY15945	Canola	plastid	55.85	53.57
CDX99659	Canola	extracellular	49.47	52.54
VIT_14s0108g01000.t01	Wine grape	cytosol	37.77	45.51
KRH40081	Soybean	cytosol	48.4	43.96
KRH01190	Soybean	cytosol, nucleus, vacuole	47.87	43.48
CDY09997	Canola	cytosol	15.96	41.67
CDY06192	Canola	cytosol	15.96	41.67
CDY35936	Canola	cytosol	17.02	38.1
CDY28045	Canola	cytosol	17.02	38.1
KRH16684	Soybean	cytosol	37.77	36.79
Solyc02g067220.2.1	Tomato	extracellular	26.6	35.71
PGSC0003DMT400064699	Potato	golgi	33.51	32.64
Solyc02g088090.1.1	Tomato	extracellular, golgi	30.85	32.04
CDY09996	Canola	cytosol	15.43	31.87
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	31.38	31.55

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078D7D2	EnsemblPlants:CDX85236	ProteinID:CDX85236	ProteinID:CDX85236.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
EnsemblPlantsGene:GSBRNA2T00142874001	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45512
PANTHER:PTHR45512:SF1	SMART:SM00054	SUPFAM:SSF47473	TMHMM:TMhelix	UniParc:UPI0004EF28E6	SEG:seg

Description

BnaC07g25470D

Coordinates

chrLK031841:+:540997..541631

Molecular Weight (calculated)

21821.6 Da

IEP (calculated)

4.176

GRAVY (calculated)

-0.427

Length

188 amino acids

Sequence
(BLAST)

001: MEKSLLSECK QSSSLFFLAL FNLFLISLGR WVSSARIFLS RFLPLLQHHQ RVRNQDQTVI TNIEEQEEED EDDYLSREDA EMVMRSLGLS ADQESDELQE
101: RYSSKEMSSL FEEKEASLEE VKQAFDVFDE NRDGFIDATE LQRVLTILGF KEGSYLENCS VMIRSLDGNK DGRIDFNGFV KFMESSFC

Best Arabidopsis Sequence Match ( AT3G29000.1 )
(BLAST)

001: MESKSSSSSL PLFALFNFFL ISFCRWVSST RIFLSRFVPL LQHHQRVFDK KNNKDQQETL TKQEDDDDDD DDDDDDDDDD IDISREEAEM VMRSLGLFYN
101: DDQLQEQYSA KEVSSLFEEK EASLEEVKQA FDVFDENKDG FIDAIELQRV LTILGFKQGS YLDNCLVMIR SLDGNKDGKI DFNEFVKFME TSFY

Arabidopsis Description

CML45Probable calcium-binding protein CML30 [Source:UniProtKB/Swiss-Prot;Acc:Q9MBG5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.