CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033077.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion, plastid	98.4	98.92
CDY20005	Canola	cytosol	43.85	78.1
CDX85236	Canola	endoplasmic reticulum, extracellular	73.8	73.4
CDY66024	Canola	endoplasmic reticulum, extracellular	71.66	72.83
CDX74438	Canola	cytosol	37.97	66.36
CDY30262	Canola	cytosol	37.97	66.36
AT3G29000.1	Thale cress	endoplasmic reticulum	60.43	58.25
CDX67435	Canola	plastid	54.01	51.53
CDY37011	Canola	plastid	52.94	51.3
CDY15945	Canola	plastid	51.87	49.49
CDX99659	Canola	extracellular	44.92	47.46
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	49.73	46.73
VIT_14s0108g01000.t01	Wine grape	cytosol	36.9	44.23
KRH40081	Soybean	cytosol	43.32	39.13
KRH01190	Soybean	cytosol, nucleus, vacuole	42.78	38.65
CDY09997	Canola	cytosol	14.44	37.5
CDY06192	Canola	cytosol	14.44	37.5
Solyc02g067220.2.1	Tomato	extracellular	25.13	33.57
CDY28045	Canola	cytosol	14.97	33.33
CDY35936	Canola	cytosol	14.97	33.33
KRH16684	Soybean	cytosol	33.16	32.12
Solyc02g088090.1.1	Tomato	extracellular, golgi	29.41	30.39
PGSC0003DMT400064699	Potato	golgi	31.02	30.05
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	29.41	29.41
CDY09996	Canola	cytosol	13.9	28.57

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078I3H9	UniProt:A0A078I3H9	EnsemblPlants:CDY44416	ProteinID:CDY44416
ProteinID:CDY44416.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00080100001	InterPro:IPR002048
PFAM:PF13405	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45512	PANTHER:PTHR45512:SF1	SMART:SM00054
SUPFAM:SSF47473	TMHMM:TMhelix	UniParc:UPI0004EF3379	:	:	:

Description

BnaA02g29610DBnaA02g29610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3H9]

Coordinates

chrLK032588:-:176174..176737

Molecular Weight (calculated)

21833.8 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.443

Length

187 amino acids

Sequence
(BLAST)

001: MEKSFLSEYK RSSSLTFLAL FNLFLIKFGR WVSTTRIFLF RLFPLLQHQQ RVSHKHESLT KQGIEEEEEY DDLCRADIEM VMRTLGLSPD QESDKLQERY
101: SSKEISSLFE SNEASLEEVK QAFDVFDENR DGVIDATELQ RVLTILGFKE GYFLGNCSAM LRSVHENKDG RIDFNGFVKF MENNNSL

Best Arabidopsis Sequence Match ( AT3G29000.1 )
(BLAST)

001: MESKSSSSSL PLFALFNFFL ISFCRWVSST RIFLSRFVPL LQHHQRVFDK KNNKDQQETL TKQEDDDDDD DDDDDDDDDD IDISREEAEM VMRSLGLFYN
101: DDQLQEQYSA KEVSSLFEEK EASLEEVKQA FDVFDENKDG FIDAIELQRV LTILGFKQGS YLDNCLVMIR SLDGNKDGKI DFNEFVKFME TSFY

Arabidopsis Description

CML45Probable calcium-binding protein CML30 [Source:UniProtKB/Swiss-Prot;Acc:Q9MBG5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.