CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, golgi, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	CDX73678	AT3G51920.1	17360592
AT5G39670.1	CDX95314	AT3G51920.1	17360592
AT5G39670.1	CDY23174	AT3G51920.1	17360592
AT5G39670.1	CDY06478	AT4G14640.1	17360592
AT5G39670.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028438.1-P	Field mustard	plastid	99.49	99.49
CDY37011	Canola	plastid	91.84	93.26
CDY30262	Canola	cytosol	47.96	87.85
CDX74438	Canola	cytosol	47.96	87.85
CDY15945	Canola	plastid	80.1	80.1
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	71.94	70.85
CDY20005	Canola	cytosol	37.76	70.48
CDX99659	Canola	extracellular	62.24	68.93
AT5G39670.1	Thale cress	plastid	70.92	68.14
CDY66024	Canola	endoplasmic reticulum, extracellular	56.12	59.78
CDX85236	Canola	endoplasmic reticulum, extracellular	57.14	59.57
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	51.53	54.01
VIT_14s0108g01000.t01	Wine grape	cytosol	35.2	44.23
KRH01190	Soybean	cytosol, nucleus, vacuole	45.92	43.48
KRH40081	Soybean	cytosol	45.41	43.0
CDY09997	Canola	cytosol	14.8	40.28
CDY06192	Canola	cytosol	14.8	40.28
CDY28045	Canola	cytosol	16.33	38.1
CDY35936	Canola	cytosol	16.33	38.1
KRH16684	Soybean	cytosol	37.24	37.82
Solyc02g067220.2.1	Tomato	extracellular	26.02	36.43
Solyc02g088090.1.1	Tomato	extracellular, golgi	32.65	35.36
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	33.16	34.76
PGSC0003DMT400064699	Potato	golgi	31.63	32.12
CDY09996	Canola	cytosol	14.29	30.77

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078BS46	EnsemblPlants:CDX67435	ProteinID:CDX67435	ProteinID:CDX67435.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
EnsemblPlantsGene:GSBRNA2T00098535001	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45512
PANTHER:PTHR45512:SF1	SMART:SM00054	SUPFAM:SSF47473	TMHMM:TMhelix	UniParc:UPI0004EF155A	SEG:seg

Description

BnaA07g14750D

Coordinates

chrLK031787:+:229690..230280

Molecular Weight (calculated)

22799.3 Da

IEP (calculated)

5.888

GRAVY (calculated)

-0.323

Length

196 amino acids

Sequence
(BLAST)

001: MTANHLYCLI TMEKSSLSQC KHSSSFPLFG LVDFFLIGFF RWVSFAQIFF SRFCHLPQHE HCVSEKKSKD LEIQSLIKHG NGLCIEDAEM VMQSLGLFTD
101: QEREGLQKRY SSEELSNLFE EKEPSLEEVK QAFDVFDENR DGFLDPIDLQ RVLSILGLKQ GSNLENCRRM IRSFHGNKNG RIDFQGFVKF MENNFC

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.