Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018296.1-P | Field mustard | cytosol | 65.56 | 100.0 |
| CDY23174 | Canola | cytosol | 100.0 | 100.0 |
| Bra033467.1-P | Field mustard | cytosol | 83.44 | 95.45 |
| AT3G51920.1 | Thale cress | cytosol | 93.38 | 93.38 |
| CDX73678 | Canola | nucleus | 36.42 | 59.14 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | GO:A0A078E439 | UniProt:A0A078E439 | EnsemblPlants:CDX95314 | ProteinID:CDX95314 |
| ProteinID:CDX95314.1 | ProteinID:CDY23174.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | EnsemblPlantsGene:GSBRNA2T00100981001 | InterPro:IPR002048 | PFAM:PF13499 | ScanProsite:PS00018 |
| PFscan:PS50222 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF211 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0004EAED1E |
Description
BnaC04g28440DBnaA04g05850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078E439]
Coordinates
chrLK031888:-:177911..179125
Molecular Weight (calculated)
16970.0 Da
IEP (calculated)
3.939
GRAVY (calculated)
-0.258
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAFTDEQI QEFYEAFCLI DKDSDGFITK EKLTKVMKSM GKSPNEEQLQ EMMSHVDIFG NGGITFDDFL YIMAQNTSQE AASDELIEVF RVFDRDGDGV
101: ISALELGEGM KDMGMKITVE EAEHMVREAD LDGDGVLSFH EFSKMMIAAS Y
101: ISALELGEGM KDMGMKITVE EAEHMVREAD LDGDGVLSFH EFSKMMIAAS Y
001: MADAFTDEQI QEFYEAFCLI DKDSDGFITK EKLTKVMKSM GKNPKAEQLQ QMMSDVDIFG NGGITFDDFL YIMAQNTSQE SASDELIEVF RVFDRDGDGL
101: ISQLELGEGM KDMGMKITAE EAEHMVREAD LDGDGFLSFH EFSKMMIAAS Y
101: ISQLELGEGM KDMGMKITAE EAEHMVREAD LDGDGFLSFH EFSKMMIAAS Y
Arabidopsis Description
CML9Calmodulin-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9S744]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.