Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17080.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDY06478 | AT4G14640.1 | 17360592 |
| AT4G17080.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040112.1-P | Field mustard | cytosol | 46.98 | 99.57 |
| CDY67767 | Canola | cytosol | 97.78 | 96.42 |
| CDX76579 | Canola | cytosol, endoplasmic reticulum, golgi | 79.84 | 88.79 |
| AT4G17080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 87.3 | 84.41 |
| CDY43465 | Canola | cytosol | 82.66 | 83.0 |
| HORVU4Hr1G082070.1 | Barley | endoplasmic reticulum | 45.97 | 59.53 |
| PGSC0003DMT400004624 | Potato | plastid | 48.59 | 55.66 |
| KRH04250 | Soybean | cytosol | 46.98 | 53.81 |
| Zm00001d000053_P001 | Maize | cytosol, plastid | 48.99 | 53.52 |
| EER94469 | Sorghum | plastid | 48.99 | 53.41 |
| GSMUA_Achr2P10390_001 | Banana | cytosol | 51.41 | 53.35 |
| Zm00001d029979_P001 | Maize | plastid | 48.79 | 53.3 |
| Os10t0565000-01 | Rice | cytosol, plastid | 49.8 | 52.89 |
| GSMUA_Achr4P21670_001 | Banana | cytosol | 51.61 | 51.72 |
| TraesCSU01G007200.1 | Wheat | nucleus | 47.38 | 50.54 |
| HORVU1Hr1G055220.1 | Barley | cytosol | 47.78 | 50.53 |
| Solyc08g077730.2.1 | Tomato | cytosol | 52.62 | 49.9 |
| GSMUA_Achr4P26370_001 | Banana | plastid | 42.74 | 49.19 |
| VIT_02s0012g00090.t01 | Wine grape | mitochondrion | 55.85 | 48.94 |
| CDY38830 | Canola | plastid | 34.88 | 43.58 |
| CDX96565 | Canola | plastid | 34.88 | 43.58 |
| CDY00407 | Canola | cytosol, golgi, mitochondrion, plastid | 34.88 | 43.58 |
| CDY01306 | Canola | cytosol, golgi, mitochondrion, plastid | 34.88 | 43.58 |
| CDY44523 | Canola | plastid | 35.08 | 43.28 |
| CDX88382 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 33.27 | 42.86 |
| CDY30636 | Canola | mitochondrion | 36.9 | 42.86 |
| CDY04690 | Canola | golgi, mitochondrion, peroxisome, plasma membrane | 36.69 | 42.62 |
| CDX79226 | Canola | cytosol | 13.91 | 42.33 |
| CDY38331 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 35.28 | 42.17 |
| CDY47390 | Canola | cytosol | 11.69 | 23.87 |
| CDX74021 | Canola | nucleus | 11.29 | 19.31 |
| CDY07965 | Canola | nucleus | 11.29 | 19.31 |
| CDX76021 | Canola | cytosol | 11.69 | 17.68 |
| CDX72088 | Canola | cytosol | 12.1 | 17.65 |
| CDX96562 | Canola | cytosol | 17.14 | 11.58 |
| CDY22511 | Canola | cytosol | 17.34 | 11.3 |
| CDY35423 | Canola | cytosol | 17.34 | 11.3 |
| CDX79949 | Canola | cytosol | 16.73 | 10.74 |
| CDY23866 | Canola | cytosol | 16.73 | 10.74 |
| CDX97920 | Canola | cytosol | 16.33 | 10.67 |
| CDY12865 | Canola | cytosol | 16.73 | 10.65 |
| CDY38833 | Canola | cytosol | 15.32 | 10.59 |
| CDY14647 | Canola | cytosol | 15.73 | 10.58 |
| CDY64062 | Canola | cytosol | 15.73 | 10.54 |
| CDY22147 | Canola | cytosol | 15.12 | 10.5 |
| CDY27172 | Canola | cytosol | 16.53 | 10.5 |
| CDY40487 | Canola | cytosol | 16.73 | 10.45 |
| CDY54607 | Canola | nucleus | 17.14 | 10.42 |
| CDY19330 | Canola | cytosol | 16.13 | 10.4 |
| CDY41570 | Canola | nucleus | 16.94 | 10.27 |
| CDY11484 | Canola | cytosol | 14.92 | 10.11 |
| CDY34670 | Canola | cytosol | 10.69 | 7.81 |
| CDY34857 | Canola | cytosol | 10.48 | 7.66 |
| CDY47393 | Canola | cytosol | 1.41 | 6.8 |
| CDY47391 | Canola | mitochondrion | 4.03 | 5.81 |
| CDX76709 | Canola | cytosol | 14.72 | 5.75 |
| CDX72087 | Canola | cytosol | 4.44 | 5.68 |
| CDX76024 | Canola | cytosol | 2.02 | 5.65 |
| CDY59828 | Canola | mitochondrion | 4.44 | 5.37 |
| CDX67667 | Canola | mitochondrion | 4.44 | 5.37 |
| CDX74020 | Canola | mitochondrion | 4.03 | 5.18 |
| CDY07964 | Canola | mitochondrion | 3.83 | 5.0 |
| CDX76022 | Canola | cytosol, mitochondrion | 2.62 | 4.89 |
| CDY15175 | Canola | cytosol | 3.02 | 3.53 |
| CDX90034 | Canola | cytosol | 3.02 | 3.53 |
| CDY52812 | Canola | cytosol | 2.62 | 3.07 |
| CDY11485 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY35600 | EnsemblPlantsGene:GSBRNA2T00058954001 | Gene3D:2.20.110.10 | GO:A0A078HB37 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:MORN | ncoils:Coil | PANTHER:PTHR23084 | PANTHER:PTHR23084:SF203 | PFAM:PF02493 |
| ProteinID:CDY35600 | ProteinID:CDY35600.1 | SEG:seg | SMART:SM00698 | SUPFAM:SSF82185 | TMHMM:TMhelix |
| UniParc:UPI0004EBE65F | UniProt:A0A078HB37 | MapMan:35.1 | : | : | : |
Description
BnaC01g21220DBnaC01g21220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HB37]
Coordinates
chrLK032356:-:108473..110951
Molecular Weight (calculated)
55336.5 Da
IEP (calculated)
10.150
GRAVY (calculated)
-0.464
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLKNSTVAE RRFIGKEAAS YPPCSDLDPK PKIKHHRPLQ VPETLTPEKP TYRTTIGANP YNQSQAQSHL AVGIPDSPSP QKRPAAAAQS SHPFNDFRRG
101: GGSNRGSLGL LSFLSSSLPS NQKLLRQVIR VRLICFHLRF LLLLSVPPLY IFFLLISVRV LLLFLFSIIA FSFILSISLK FALPHLPSIR LFIARLLSLS
201: PTRSSSSSQE RTKQVVWSIG SKPVTEKKTN SGSWVQKYSS GDVYEGEFLR GKCSGSGVYY YSMKGKYEGD WVDGKYDGFG VETWSKGSRY RGQYRQGMRH
301: GTGIYRFYTG DVYAGEWSNG QSHGCGVYTS EDGSRFVGEF KWGVKHGLGH YHFRNGDTYA GEYFADRMHG FGVYLFGNGH RYEGAWHEGR RQGLGMYTFR
401: NGETQAGHWE NGVLSCPTEQ TTRPDSSFSI SHSKVLDTVQ QARKAAEKAR EVVKVEERVN RAVMVANRAA NAARVAATKA VQTQTYYSSG GGDDPL
101: GGSNRGSLGL LSFLSSSLPS NQKLLRQVIR VRLICFHLRF LLLLSVPPLY IFFLLISVRV LLLFLFSIIA FSFILSISLK FALPHLPSIR LFIARLLSLS
201: PTRSSSSSQE RTKQVVWSIG SKPVTEKKTN SGSWVQKYSS GDVYEGEFLR GKCSGSGVYY YSMKGKYEGD WVDGKYDGFG VETWSKGSRY RGQYRQGMRH
301: GTGIYRFYTG DVYAGEWSNG QSHGCGVYTS EDGSRFVGEF KWGVKHGLGH YHFRNGDTYA GEYFADRMHG FGVYLFGNGH RYEGAWHEGR RQGLGMYTFR
401: NGETQAGHWE NGVLSCPTEQ TTRPDSSFSI SHSKVLDTVQ QARKAAEKAR EVVKVEERVN RAVMVANRAA NAARVAATKA VQTQTYYSSG GGDDPL
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Arabidopsis Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.