Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17080.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDY06478 | AT4G14640.1 | 17360592 |
| AT4G17080.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040112.1-P | Field mustard | cytosol | 46.32 | 99.57 |
| CDY35600 | Canola | cytosol | 96.42 | 97.78 |
| CDX76579 | Canola | cytosol, endoplasmic reticulum, golgi | 79.52 | 89.69 |
| AT4G17080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 87.08 | 85.38 |
| CDY43465 | Canola | cytosol | 82.9 | 84.41 |
| HORVU4Hr1G082070.1 | Barley | endoplasmic reticulum | 45.13 | 59.27 |
| PGSC0003DMT400004624 | Potato | plastid | 47.51 | 55.2 |
| KRH04250 | Soybean | cytosol | 46.92 | 54.5 |
| GSMUA_Achr2P10390_001 | Banana | cytosol | 50.7 | 53.35 |
| Zm00001d000053_P001 | Maize | cytosol, plastid | 48.11 | 53.3 |
| EER94469 | Sorghum | plastid | 48.11 | 53.19 |
| Zm00001d029979_P001 | Maize | plastid | 47.91 | 53.08 |
| Os10t0565000-01 | Rice | cytosol, plastid | 48.91 | 52.68 |
| GSMUA_Achr4P21670_001 | Banana | cytosol | 50.89 | 51.72 |
| TraesCSU01G007200.1 | Wheat | nucleus | 46.52 | 50.32 |
| HORVU1Hr1G055220.1 | Barley | cytosol | 46.92 | 50.32 |
| Solyc08g077730.2.1 | Tomato | cytosol | 51.49 | 49.52 |
| GSMUA_Achr4P26370_001 | Banana | plastid | 42.35 | 49.42 |
| VIT_02s0012g00090.t01 | Wine grape | mitochondrion | 55.47 | 49.29 |
| CDY00407 | Canola | cytosol, golgi, mitochondrion, plastid | 34.39 | 43.58 |
| CDY01306 | Canola | cytosol, golgi, mitochondrion, plastid | 34.39 | 43.58 |
| CDY38830 | Canola | plastid | 34.19 | 43.32 |
| CDX96565 | Canola | plastid | 34.19 | 43.32 |
| CDX88382 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 32.8 | 42.86 |
| CDY30636 | Canola | mitochondrion | 36.38 | 42.86 |
| CDY44523 | Canola | plastid | 34.19 | 42.79 |
| CDY04690 | Canola | golgi, mitochondrion, peroxisome, plasma membrane | 36.18 | 42.62 |
| CDX79226 | Canola | cytosol | 13.52 | 41.72 |
| CDY38331 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 34.39 | 41.69 |
| CDY47390 | Canola | cytosol | 11.53 | 23.87 |
| CDX74021 | Canola | nucleus | 11.13 | 19.31 |
| CDY07965 | Canola | nucleus | 11.13 | 19.31 |
| CDX76021 | Canola | cytosol | 11.53 | 17.68 |
| CDX72088 | Canola | cytosol | 11.93 | 17.65 |
| CDX96562 | Canola | cytosol | 16.9 | 11.58 |
| CDY22511 | Canola | cytosol | 17.1 | 11.3 |
| CDY35423 | Canola | cytosol | 17.1 | 11.3 |
| CDX79949 | Canola | cytosol | 16.5 | 10.74 |
| CDY23866 | Canola | cytosol | 16.5 | 10.74 |
| CDY12865 | Canola | cytosol | 16.5 | 10.65 |
| CDY38833 | Canola | cytosol | 15.11 | 10.59 |
| CDY14647 | Canola | cytosol | 15.51 | 10.58 |
| CDY64062 | Canola | cytosol | 15.51 | 10.54 |
| CDX97920 | Canola | cytosol | 15.9 | 10.54 |
| CDY54607 | Canola | nucleus | 17.1 | 10.54 |
| CDY22147 | Canola | cytosol | 14.91 | 10.5 |
| CDY27172 | Canola | cytosol | 16.3 | 10.5 |
| CDY40487 | Canola | cytosol | 16.5 | 10.45 |
| CDY41570 | Canola | nucleus | 16.9 | 10.39 |
| CDY19330 | Canola | cytosol | 15.71 | 10.27 |
| CDY11484 | Canola | cytosol | 14.71 | 10.11 |
| CDY34670 | Canola | cytosol | 10.54 | 7.81 |
| CDY34857 | Canola | cytosol | 10.34 | 7.66 |
| CDY47393 | Canola | cytosol | 1.39 | 6.8 |
| CDY47391 | Canola | mitochondrion | 3.98 | 5.81 |
| CDX76709 | Canola | cytosol | 14.51 | 5.75 |
| CDX72087 | Canola | cytosol | 4.37 | 5.68 |
| CDX76024 | Canola | cytosol | 1.99 | 5.65 |
| CDY59828 | Canola | mitochondrion | 4.37 | 5.37 |
| CDX67667 | Canola | mitochondrion | 4.37 | 5.37 |
| CDX74020 | Canola | mitochondrion | 3.98 | 5.18 |
| CDY07964 | Canola | mitochondrion | 3.78 | 5.0 |
| CDX76022 | Canola | cytosol, mitochondrion | 2.58 | 4.89 |
| CDY15175 | Canola | cytosol | 2.98 | 3.53 |
| CDX90034 | Canola | cytosol | 2.98 | 3.53 |
| CDY52812 | Canola | cytosol | 2.58 | 3.07 |
| CDY11485 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY67767 | EnsemblPlantsGene:GSBRNA2T00066801001 | Gene3D:2.20.110.10 | GO:A0A078JQV9 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:MORN | ncoils:Coil | PANTHER:PTHR23084 | PANTHER:PTHR23084:SF203 | PFAM:PF02493 |
| ProteinID:CDY67767 | ProteinID:CDY67767.1 | SEG:seg | SMART:SM00698 | SUPFAM:SSF82185 | TMHMM:TMhelix |
| UniParc:UPI0004EF3DD3 | UniProt:A0A078JQV9 | MapMan:35.1 | : | : | : |
Description
BnaCnng56290DBnaCnng56290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQV9]
Coordinates
chrLK036494:+:5720..8030
Molecular Weight (calculated)
55915.0 Da
IEP (calculated)
10.086
GRAVY (calculated)
-0.463
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLKNSTVAE RRFIGKEAAS YPPSSDLDPK PKIKHHRPLQ VPETLTPEKP TYRSAIGANP YNQSQAQSHL TVEIPDSSSP QKRPAAAAAQ SSHPFNDFRR
101: GGGGSDRGSL GLLSFLSSSL PSNQKLLRQV IRVRLICFHL RFLLLLSVPP LYIFFLLISV RVVLLFVFSI IAFSFILSIS LKFALPHLPS IRLFIARLLS
201: LSPTRSSSSS SSSSSQERTK QVVWSIGSKP VTEKKTNSGS WVQKYSSGDV YEGEFLRGKC SGSGVYYYSM KGKYEGDWVD GKYDGFGVET WAKGSRYRGQ
301: YRQGMRHGTG IYRFYTGDVY AGEWSNGQSH GCGVYTSEDG SRFVGEFKWG VKHGLGHYYF RNGDTYAGEY FADRMHGFGV YLFGNGHRYE GAWHEGRRQG
401: LGMYTFRNGE TQAGHWENGV LSCPTEQTTR PDSSFSISHS KVLDTVQQAR KAAEKAREVV KVEERVNRAV MVANRAANAA RVAATKAVQT QTYYSSGGGD
501: DPL
101: GGGGSDRGSL GLLSFLSSSL PSNQKLLRQV IRVRLICFHL RFLLLLSVPP LYIFFLLISV RVVLLFVFSI IAFSFILSIS LKFALPHLPS IRLFIARLLS
201: LSPTRSSSSS SSSSSQERTK QVVWSIGSKP VTEKKTNSGS WVQKYSSGDV YEGEFLRGKC SGSGVYYYSM KGKYEGDWVD GKYDGFGVET WAKGSRYRGQ
301: YRQGMRHGTG IYRFYTGDVY AGEWSNGQSH GCGVYTSEDG SRFVGEFKWG VKHGLGHYYF RNGDTYAGEY FADRMHGFGV YLFGNGHRYE GAWHEGRRQG
401: LGMYTFRNGE TQAGHWENGV LSCPTEQTTR PDSSFSISHS KVLDTVQQAR KAAEKAREVV KVEERVNRAV MVANRAANAA RVAATKAVQT QTYYSSGGGD
501: DPL
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Arabidopsis Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.