Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17080.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDY06478 | AT4G14640.1 | 17360592 |
| AT4G17080.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76579 | Canola | cytosol, endoplasmic reticulum, golgi | 85.83 | 95.07 |
| Bra021069.1-P | Field mustard | cytosol, golgi, plasma membrane | 86.03 | 94.65 |
| CDY67767 | Canola | cytosol | 84.41 | 82.9 |
| CDY35600 | Canola | cytosol | 83.0 | 82.66 |
| AT4G17080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 83.81 | 80.7 |
| HORVU4Hr1G082070.1 | Barley | endoplasmic reticulum | 45.95 | 59.27 |
| PGSC0003DMT400004624 | Potato | plastid | 48.38 | 55.2 |
| KRH04250 | Soybean | cytosol | 46.96 | 53.58 |
| GSMUA_Achr4P21670_001 | Banana | cytosol | 52.83 | 52.73 |
| GSMUA_Achr2P10390_001 | Banana | cytosol | 50.61 | 52.3 |
| Zm00001d029979_P001 | Maize | plastid | 47.98 | 52.2 |
| Zm00001d000053_P001 | Maize | cytosol, plastid | 47.98 | 52.2 |
| EER94469 | Sorghum | plastid | 47.98 | 52.09 |
| Os10t0565000-01 | Rice | cytosol, plastid | 48.58 | 51.39 |
| TraesCSU01G007200.1 | Wheat | nucleus | 46.76 | 49.68 |
| HORVU1Hr1G055220.1 | Barley | cytosol | 46.96 | 49.47 |
| GSMUA_Achr4P26370_001 | Banana | plastid | 42.71 | 48.96 |
| VIT_02s0012g00090.t01 | Wine grape | mitochondrion | 55.67 | 48.59 |
| Solyc08g077730.2.1 | Tomato | cytosol | 51.01 | 48.18 |
| CDY38830 | Canola | plastid | 35.02 | 43.58 |
| CDX96565 | Canola | plastid | 35.02 | 43.58 |
| CDX79226 | Canola | cytosol | 14.37 | 43.56 |
| CDX88382 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 33.6 | 43.12 |
| CDY01306 | Canola | cytosol, golgi, mitochondrion, plastid | 34.62 | 43.07 |
| CDY00407 | Canola | cytosol, golgi, mitochondrion, plastid | 34.62 | 43.07 |
| CDY30636 | Canola | mitochondrion | 37.04 | 42.86 |
| CDY04690 | Canola | golgi, mitochondrion, peroxisome, plasma membrane | 36.84 | 42.62 |
| CDY44523 | Canola | plastid | 34.62 | 42.54 |
| CDY38331 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 34.82 | 41.45 |
| CDY47390 | Canola | cytosol | 11.34 | 23.05 |
| CDY07965 | Canola | nucleus | 11.34 | 19.31 |
| CDX74021 | Canola | nucleus | 11.34 | 19.31 |
| CDX76021 | Canola | cytosol | 11.34 | 17.07 |
| CDX72088 | Canola | cytosol | 11.74 | 17.06 |
| CDX96562 | Canola | cytosol | 17.21 | 11.58 |
| CDY22511 | Canola | cytosol | 16.8 | 10.91 |
| CDY35423 | Canola | cytosol | 16.8 | 10.91 |
| CDY22147 | Canola | cytosol | 15.59 | 10.78 |
| CDX97920 | Canola | cytosol | 16.4 | 10.67 |
| CDY38833 | Canola | cytosol | 15.38 | 10.59 |
| CDY14647 | Canola | cytosol | 15.79 | 10.58 |
| CDY64062 | Canola | cytosol | 15.79 | 10.54 |
| CDY12865 | Canola | cytosol | 16.6 | 10.53 |
| CDX79949 | Canola | cytosol | 16.4 | 10.48 |
| CDY23866 | Canola | cytosol | 16.4 | 10.48 |
| CDY19330 | Canola | cytosol | 16.19 | 10.4 |
| CDY40487 | Canola | cytosol | 16.6 | 10.33 |
| CDY54607 | Canola | nucleus | 17.0 | 10.29 |
| CDY27172 | Canola | cytosol | 16.19 | 10.24 |
| CDY41570 | Canola | nucleus | 16.8 | 10.15 |
| CDY11484 | Canola | cytosol | 14.78 | 9.97 |
| CDY34670 | Canola | cytosol | 10.73 | 7.81 |
| CDY34857 | Canola | cytosol | 10.53 | 7.66 |
| CDY47393 | Canola | cytosol | 1.21 | 5.83 |
| CDX74020 | Canola | mitochondrion | 4.45 | 5.7 |
| CDX72087 | Canola | cytosol | 4.45 | 5.68 |
| CDX76709 | Canola | cytosol | 14.57 | 5.67 |
| CDY07964 | Canola | mitochondrion | 4.25 | 5.53 |
| CDY47391 | Canola | mitochondrion | 3.85 | 5.52 |
| CDY59828 | Canola | mitochondrion | 4.45 | 5.37 |
| CDX67667 | Canola | mitochondrion | 4.45 | 5.37 |
| CDX76024 | Canola | cytosol | 1.82 | 5.08 |
| CDX76022 | Canola | cytosol, mitochondrion | 2.63 | 4.89 |
| CDY15175 | Canola | cytosol | 3.04 | 3.53 |
| CDX90034 | Canola | cytosol | 3.04 | 3.53 |
| CDY52812 | Canola | cytosol | 2.63 | 3.07 |
| CDY11485 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY43465 | EnsemblPlantsGene:GSBRNA2T00076699001 | Gene3D:2.20.110.10 | GO:A0A078HY68 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:MORN | ncoils:Coil | PANTHER:PTHR23084 | PANTHER:PTHR23084:SF203 | PFAM:PF02493 |
| ProteinID:CDY43465 | ProteinID:CDY43465.1 | SEG:seg | SMART:SM00698 | SUPFAM:SSF82185 | TMHMM:TMhelix |
| UniParc:UPI0004EF091E | UniProt:A0A078HY68 | MapMan:35.1 | : | : | : |
Description
BnaC08g10880DBnaC08g10880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY68]
Coordinates
chrLK032558:-:22337..24831
Molecular Weight (calculated)
54895.1 Da
IEP (calculated)
9.958
GRAVY (calculated)
-0.355
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLKNSSVAE RRFIGKEAAA CLPSSDSDPK PKIKHHRPLQ VPETVEIADS SSPPQSSHPF DLRRGGGGSS RASLGSILSF LSSSLPSIPS ATNQKLIRQV
101: LRVRLICFHL RFLLLLSVPP LYVFFLLISF RFFLLFVFSI LTFSFILSIS LKLALPHLPS IGLIIARLLS LKLTPARSSF SSSSQVVWSI GSKPVTEKKT
201: SSGSWVQKYS SGDVYEGEFH KGKCSGSGVY YYSMKGKYEG DWVDGKYDGY GVETWAKGSR YRGQYRQGMR HGAGIYRFYT GDVYAGEWSN GQSHGCGVYT
301: SEDGSRFVGE FKWGVKHGLG HYHFRNGDTY AGEYFADRMH GFGVYQFGNG HRYEGAWHEG RRQGLGMYTF RNGETQAGHW DDGVLSCPTE QTTRPGSSFS
401: ISHSKVLDTV QQARKAAEKA HEAVKVEERV NRTVMVANRA ANSARVAATK AVQTKTYYSS GGDDPLCVKA FDIVTVMNLT SNFFGNMREK NRDI
101: LRVRLICFHL RFLLLLSVPP LYVFFLLISF RFFLLFVFSI LTFSFILSIS LKLALPHLPS IGLIIARLLS LKLTPARSSF SSSSQVVWSI GSKPVTEKKT
201: SSGSWVQKYS SGDVYEGEFH KGKCSGSGVY YYSMKGKYEG DWVDGKYDGY GVETWAKGSR YRGQYRQGMR HGAGIYRFYT GDVYAGEWSN GQSHGCGVYT
301: SEDGSRFVGE FKWGVKHGLG HYHFRNGDTY AGEYFADRMH GFGVYQFGNG HRYEGAWHEG RRQGLGMYTF RNGETQAGHW DDGVLSCPTE QTTRPGSSFS
401: ISHSKVLDTV QQARKAAEKA HEAVKVEERV NRTVMVANRA ANSARVAATK AVQTKTYYSS GGDDPLCVKA FDIVTVMNLT SNFFGNMREK NRDI
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Arabidopsis Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.