Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17080.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT4G17080.1 | CDY06478 | AT4G14640.1 | 17360592 |
| AT4G17080.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021069.1-P | Field mustard | cytosol, golgi, plasma membrane | 99.33 | 98.66 |
| CDY43465 | Canola | cytosol | 95.07 | 85.83 |
| CDY35600 | Canola | cytosol | 88.79 | 79.84 |
| CDY67767 | Canola | cytosol | 89.69 | 79.52 |
| AT4G17080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 89.91 | 78.17 |
| HORVU4Hr1G082070.1 | Barley | endoplasmic reticulum | 50.9 | 59.27 |
| PGSC0003DMT400004624 | Potato | plastid | 53.81 | 55.43 |
| KRH04250 | Soybean | cytosol | 51.57 | 53.12 |
| Zm00001d029979_P001 | Maize | plastid | 53.14 | 52.2 |
| Zm00001d000053_P001 | Maize | cytosol, plastid | 52.91 | 51.98 |
| EER94469 | Sorghum | plastid | 52.91 | 51.87 |
| Os10t0565000-01 | Rice | cytosol, plastid | 53.81 | 51.39 |
| GSMUA_Achr2P10390_001 | Banana | cytosol | 54.71 | 51.05 |
| GSMUA_Achr4P21670_001 | Banana | cytosol | 56.28 | 50.71 |
| TraesCSU01G007200.1 | Wheat | nucleus | 52.02 | 49.89 |
| HORVU1Hr1G055220.1 | Barley | cytosol | 52.02 | 49.47 |
| GSMUA_Achr4P26370_001 | Banana | plastid | 47.31 | 48.96 |
| Solyc08g077730.2.1 | Tomato | cytosol | 55.83 | 47.61 |
| VIT_02s0012g00090.t01 | Wine grape | mitochondrion | 60.09 | 47.35 |
| CDX96565 | Canola | plastid | 38.79 | 43.58 |
| CDY38830 | Canola | plastid | 38.79 | 43.58 |
| CDX79226 | Canola | cytosol | 15.92 | 43.56 |
| CDX88382 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 36.55 | 42.34 |
| CDY00407 | Canola | cytosol, golgi, mitochondrion, plastid | 37.67 | 42.32 |
| CDY01306 | Canola | cytosol, golgi, mitochondrion, plastid | 37.67 | 42.32 |
| CDY30636 | Canola | mitochondrion | 40.13 | 41.92 |
| CDY04690 | Canola | golgi, mitochondrion, peroxisome, plasma membrane | 39.91 | 41.69 |
| CDY44523 | Canola | plastid | 37.22 | 41.29 |
| CDY38331 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 37.44 | 40.24 |
| CDY47390 | Canola | cytosol | 12.33 | 22.63 |
| CDX74021 | Canola | nucleus | 12.33 | 18.97 |
| CDY07965 | Canola | nucleus | 12.33 | 18.97 |
| CDX76021 | Canola | cytosol | 12.33 | 16.77 |
| CDX72088 | Canola | cytosol | 12.56 | 16.47 |
| CDX96562 | Canola | cytosol | 18.61 | 11.31 |
| CDX97920 | Canola | cytosol | 18.16 | 10.67 |
| CDY22511 | Canola | cytosol | 18.16 | 10.64 |
| CDY35423 | Canola | cytosol | 18.16 | 10.64 |
| CDY12865 | Canola | cytosol | 18.39 | 10.53 |
| CDY22147 | Canola | cytosol | 16.82 | 10.5 |
| CDY19330 | Canola | cytosol | 17.94 | 10.4 |
| CDY40487 | Canola | cytosol | 18.39 | 10.33 |
| CDY14647 | Canola | cytosol | 17.04 | 10.31 |
| CDY38833 | Canola | cytosol | 16.59 | 10.31 |
| CDY64062 | Canola | cytosol | 17.04 | 10.27 |
| CDY23866 | Canola | cytosol | 17.71 | 10.22 |
| CDX79949 | Canola | cytosol | 17.71 | 10.22 |
| CDY54607 | Canola | nucleus | 18.61 | 10.17 |
| CDY41570 | Canola | nucleus | 18.39 | 10.02 |
| CDY27172 | Canola | cytosol | 17.49 | 9.99 |
| CDY11484 | Canola | cytosol | 16.14 | 9.84 |
| CDY34670 | Canola | cytosol | 11.88 | 7.81 |
| CDY34857 | Canola | cytosol | 11.66 | 7.66 |
| CDY47393 | Canola | cytosol | 1.35 | 5.83 |
| CDX72087 | Canola | cytosol | 4.93 | 5.68 |
| CDX76709 | Canola | cytosol | 15.92 | 5.59 |
| CDY47391 | Canola | mitochondrion | 4.26 | 5.52 |
| CDX74020 | Canola | mitochondrion | 4.71 | 5.44 |
| CDY59828 | Canola | mitochondrion | 4.93 | 5.37 |
| CDX67667 | Canola | mitochondrion | 4.93 | 5.37 |
| CDY07964 | Canola | mitochondrion | 4.48 | 5.26 |
| CDX76024 | Canola | cytosol | 2.02 | 5.08 |
| CDX76022 | Canola | cytosol, mitochondrion | 2.91 | 4.89 |
| CDY15175 | Canola | cytosol | 3.14 | 3.29 |
| CDX90034 | Canola | cytosol | 3.14 | 3.29 |
| CDY52812 | Canola | cytosol | 2.69 | 2.83 |
| CDY11485 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX76579 | EnsemblPlantsGene:GSBRNA2T00127021001 | Gene3D:2.20.110.10 | GO:A0A078CKN6 | InterPro:MORN | PANTHER:PTHR23084 |
| PANTHER:PTHR23084:SF203 | PFAM:PF02493 | ProteinID:CDX76579 | ProteinID:CDX76579.1 | SEG:seg | SMART:SM00698 |
| SUPFAM:SSF82185 | TMHMM:TMhelix | UniParc:UPI0004EDB8D3 | MapMan:35.1 | : | : |
Description
BnaA08g08210D
Coordinates
chrLK031807:-:2273290..2275832
Molecular Weight (calculated)
49753.0 Da
IEP (calculated)
9.925
GRAVY (calculated)
-0.330
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVNASVAER RFIGKEAAAC LPSDPKPKIK HHLPQSHLTV EIADSSSPPQ SSHPFDLRLG SILSFVSSSL PSIPSATNQK LLRQVIRVRL ICFHLRFLLL
101: LSVPPLYVFF LLISFRFFLV FVFSILAFSF FLSISLKLAL PHLPSIRLII ARLLSLKLRS SSSSQVVWSI GSKPVTEKKT NSGSWVHKYS SGDVYEGEFH
201: KGKCSGSGVY YYSMKGKYEG DWVDGKYDGY GVETWAKGSR YRGQYRQGMR HGAGIYRFYT GDVYAGEWSN GQSHGCGVYT SEDGSRFVGE FKWGVKHGLG
301: HYHFRNGDTY AGEYFADRMH GFGVYQFGNG HRYEGAWHEG RRQGLGMYTF RNGETQAGHW DDGVLSCPTE QSTRPGSSFS ISHSKVLDTV QQARKAAEKA
401: HEVVKVEERV NRAVMVANRA ANSARVAATK AVQTKTYYSS GGDDPL
101: LSVPPLYVFF LLISFRFFLV FVFSILAFSF FLSISLKLAL PHLPSIRLII ARLLSLKLRS SSSSQVVWSI GSKPVTEKKT NSGSWVHKYS SGDVYEGEFH
201: KGKCSGSGVY YYSMKGKYEG DWVDGKYDGY GVETWAKGSR YRGQYRQGMR HGAGIYRFYT GDVYAGEWSN GQSHGCGVYT SEDGSRFVGE FKWGVKHGLG
301: HYHFRNGDTY AGEYFADRMH GFGVYQFGNG HRYEGAWHEG RRQGLGMYTF RNGETQAGHW DDGVLSCPTE QSTRPGSSFS ISHSKVLDTV QQARKAAEKA
401: HEVVKVEERV NRAVMVANRA ANSARVAATK AVQTKTYYSS GGDDPL
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Arabidopsis Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.