Factsheet for VIT_02s0012g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
extracellular 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17080.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G17080.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G17080.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT4G17080.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT4G17080.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT4G17080.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G17080.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040112.1-P	Field mustard	cytosol	31.98	77.35
HORVU4Hr1G082070.1	Barley	endoplasmic reticulum	45.94	67.89
VIT_15s0021g01010.t01	Wine grape	cytosol	58.3	66.8
PGSC0003DMT400004624	Potato	plastid	48.94	63.97
KRH04250	Soybean	cytosol	47.17	61.66
EER94469	Sorghum	plastid	48.94	60.88
Os10t0565000-01	Rice	cytosol, plastid	50.18	60.81
Zm00001d029979_P001	Maize	plastid	48.76	60.79
Zm00001d000053_P001	Maize	cytosol, plastid	48.76	60.79
GSMUA_Achr2P10390_001	Banana	cytosol	50.88	60.25
CDX76579	Canola	cytosol, endoplasmic reticulum, golgi	47.35	60.09
GSMUA_Achr4P21670_001	Banana	cytosol	52.47	60.0
Bra021069.1-P	Field mustard	cytosol, golgi, plasma membrane	47.53	59.91
HORVU1Hr1G055220.1	Barley	cytosol	49.29	59.49
TraesCSU01G007200.1	Wheat	nucleus	48.76	59.35
GSMUA_Achr4P26370_001	Banana	plastid	43.99	57.77
Solyc08g077730.2.1	Tomato	cytosol	52.83	57.17
CDY35600	Canola	cytosol	48.94	55.85
CDY43465	Canola	cytosol	48.59	55.67
CDY67767	Canola	cytosol	49.29	55.47
AT4G17080.1	Thale cress	cytosol, peroxisome, plasma membrane	49.82	54.97
AT2G35170.1	Thale cress	cytosol	45.58	53.31
VIT_18s0001g03290.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane, plastid	36.75	49.41
VIT_12s0034g01790.t01	Wine grape	cytosol	15.55	11.11
VIT_13s0067g02840.t01	Wine grape	cytosol	15.02	10.8
VIT_18s0001g03820.t01	Wine grape	cytosol	15.55	10.51
VIT_08s0007g04700.t01	Wine grape	cytosol	14.31	9.67
VIT_08s0007g05240.t01	Wine grape	cytosol	10.95	9.42
VIT_06s0009g00860.t01	Wine grape	cytosol, endoplasmic reticulum	1.94	5.53

Protein Annotations

EntrezGene:100854975	wikigene:100854975	Gene3D:2.20.110.10	MapMan:35.1	ProteinID:CCB57959	ProteinID:CCB57959.1
UniProt:F6HTE9	EMBL:FN596247	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100854975
wikigene:LOC100854975	InterPro:MORN	PFAM:PF02493	PANTHER:PTHR23084	PANTHER:PTHR23084:SF203	SMART:SM00698
SUPFAM:SSF82185	TIGR:TC52515	TMHMM:TMhelix	UniParc:UPI00021085CE	ArrayExpress:VIT_02s0012g00090	EnsemblPlantsGene:VIT_02s0012g00090
EnsemblPlants:VIT_02s0012g00090.t01	unigene:Vvi.3456	RefSeq:XP_003631483	RefSeq:XP_003631483.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:5701866..5714393

Molecular Weight (calculated)

63977.5 Da

IEP (calculated)

10.395

GRAVY (calculated)

-0.564

Length

566 amino acids

Sequence
(BLAST)

001: MRHRDFWVPL HSRELSFFQK IYIKKKSRYR RIIVELGNVW FNNSIGFNRS GVSSDYNPTP PRFPPPPIQF QTHSIQQSKT HLPPNQPQAH ARISSSQYPS
101: KQTHQHQSHH QTQFHEHPST PKTILSHPHK RPIMTQMPSA LSHSPTLSSL NHNHRHHHQH QTQLDSPLPS ASQLFVCTSL VAFAKALAFK LLHHFRNAGS
201: LRIHLRVFIL LSLPPLYFFT WSPRRSLVLD FLSALAFSAA VVISLNLALP RLPSIRVFLA RSLPIKLCSS ASSASKPSQP VLWSIGSKPK SEKRTNSGSW
301: VQVYTNGDVY EGEFHKGKCS GSGVYYYYMS GRYEGDWVDE KYDGYGVETW AKGSRFRGQY RQGLRHGIGV YRFYTGDVYA GEWSNGQTHG CGVHTCEDGS
401: RYVGEFKWGV KHGFGHYHFS RNGDMYAGEY FADKMHGFGV YRFANGHRYE GAWHEGRRQG LGMYTFRNGE AQSGHWQNGV LDVPSTQNTH PASPFAVSHS
501: KVLNAVQEAR RAAEKAFDVS KVDERVNKAV ALANKAANAA RVAAVKAVQK RVHHNSDSSD TPLPIV

Best Arabidopsis Sequence Match ( AT4G17080.1 )
(BLAST)

001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL

Arabidopsis Description

AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.