Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G082070.1 | Barley | endoplasmic reticulum | 77.63 | 94.26 |
| HORVU1Hr1G055220.1 | Barley | cytosol | 93.55 | 92.75 |
| EER94469 | Sorghum | plastid | 84.52 | 86.37 |
| Os10t0565000-01 | Rice | cytosol, plastid | 86.67 | 86.3 |
| Zm00001d029979_P001 | Maize | plastid | 82.58 | 84.58 |
| Zm00001d000053_P001 | Maize | cytosol, plastid | 82.37 | 84.36 |
| KRH66442 | Soybean | cytosol | 21.29 | 74.44 |
| Bra040112.1-P | Field mustard | cytosol | 37.42 | 74.36 |
| KRH48871 | Soybean | cytosol | 21.08 | 73.68 |
| KRH54848 | Soybean | endoplasmic reticulum | 22.58 | 71.43 |
| GSMUA_Achr2P10390_001 | Banana | cytosol | 67.74 | 65.9 |
| GSMUA_Achr4P26370_001 | Banana | plastid | 54.19 | 58.47 |
| GSMUA_Achr4P21670_001 | Banana | cytosol | 61.94 | 58.18 |
| KRH46546 | Soybean | cytosol | 55.7 | 57.3 |
| KRH75587 | Soybean | cytosol | 55.7 | 57.17 |
| PGSC0003DMT400034161 | Potato | cytosol | 58.28 | 56.22 |
| KRH04250 | Soybean | cytosol | 51.61 | 55.43 |
| VIT_15s0021g01010.t01 | Wine grape | cytosol | 58.06 | 54.66 |
| Solyc10g061960.1.1 | Tomato | cytosol | 57.42 | 54.6 |
| PGSC0003DMT400004624 | Potato | plastid | 49.89 | 53.58 |
| CDX76579 | Canola | cytosol, endoplasmic reticulum, golgi | 49.89 | 52.02 |
| Bra021069.1-P | Field mustard | cytosol, golgi, plasma membrane | 50.11 | 51.89 |
| VIT_02s0012g00090.t01 | Wine grape | mitochondrion | 59.35 | 48.76 |
| CDY35600 | Canola | cytosol | 50.54 | 47.38 |
| CDY43465 | Canola | cytosol | 49.68 | 46.76 |
| CDY67767 | Canola | cytosol | 50.32 | 46.52 |
| Solyc08g077730.2.1 | Tomato | cytosol | 52.04 | 46.27 |
| AT2G35170.1 | Thale cress | cytosol | 47.74 | 45.87 |
| AT4G17080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 50.32 | 45.61 |
Protein Annotations
| EnsemblPlants:TraesCSU01G007200.1 | EnsemblPlantsGene:TraesCSU01G007200 | Gene3D:2.20.110.10 | InterPro:MORN | PANTHER:PTHR23084 | PANTHER:PTHR23084:SF203 |
| PFAM:PF02493 | SEG:seg | SMART:SM00698 | SUPFAM:SSF82185 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrUn:-:11020587..11025019
Molecular Weight (calculated)
48229.0 Da
IEP (calculated)
10.165
GRAVY (calculated)
-0.359
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MHHHHLPVAA AAAAPDAXXX XXXXXXXXXX XXXXXXXXXX XHIPASPHHA LPSTPHKRPV SMNSSSSATP TRPSPFTPPR RRKLAASSAP PAPAAAAAAA
101: AAARHLLRCL HLRLRILLLL SLPTLYFLSP SPAILPRSLL ADFLSAAAFS CALLLLLCLS LPRLPFPLPF HLPLRRPRRS PILWSIGSSP SASASAPTTG
201: HFVQVYSNGD VYEGQFNRGR CTGSGVYYYY MSGRYEGDWI DGKYDGYGVE TWARGSRYRG QYRQGLRHGH GVYRFYTGDV YSGEWSNGQS HGYGVHTCED
301: GSRYIGEFKR GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYSFANGHRY EGAWHEGRRQ GLGMYTFRNG ETQAGHWQNG VLDTLSTQNI VPGSAIAVNH
401: SKVLNAVQEA RRATEKAYDV PRVDDKVNRA VAAANKAANA ARVAAVKAAQ KRIPNNNDDL PLSIV
101: AAARHLLRCL HLRLRILLLL SLPTLYFLSP SPAILPRSLL ADFLSAAAFS CALLLLLCLS LPRLPFPLPF HLPLRRPRRS PILWSIGSSP SASASAPTTG
201: HFVQVYSNGD VYEGQFNRGR CTGSGVYYYY MSGRYEGDWI DGKYDGYGVE TWARGSRYRG QYRQGLRHGH GVYRFYTGDV YSGEWSNGQS HGYGVHTCED
301: GSRYIGEFKR GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYSFANGHRY EGAWHEGRRQ GLGMYTFRNG ETQAGHWQNG VLDTLSTQNI VPGSAIAVNH
401: SKVLNAVQEA RRATEKAYDV PRVDDKVNRA VAAANKAANA ARVAAVKAAQ KRIPNNNDDL PLSIV
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Arabidopsis Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.