Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G044710.4 | Barley | cytosol | 94.44 | 94.44 |
| TraesCS5D01G153400.1 | Wheat | cytosol | 93.33 | 93.33 |
| TraesCS5A01G139700.1 | Wheat | cytosol | 93.33 | 93.33 |
| CDX92401 | Canola | cytosol | 56.11 | 75.37 |
| AT5G21274.1 | Thale cress | cytosol | 61.67 | 74.5 |
| KRG94975 | Soybean | nucleus | 61.67 | 74.5 |
| Solyc01g008950.2.1 | Tomato | nucleus | 61.11 | 73.83 |
| CDY04474 | Canola | cytosol | 61.11 | 73.83 |
| CDY56411 | Canola | cytosol | 61.11 | 73.83 |
| PGSC0003DMT400018569 | Potato | cytosol | 61.11 | 73.83 |
| PGSC0003DMT400058435 | Potato | cytosol | 61.11 | 73.83 |
| PGSC0003DMT400070437 | Potato | cytosol | 61.11 | 73.83 |
| CDY65072 | Canola | cytosol | 61.11 | 73.83 |
| Solyc10g077010.1.1 | Tomato | cytosol | 61.11 | 73.83 |
| Solyc10g081170.1.1 | Tomato | extracellular | 61.11 | 73.83 |
| Solyc11g072240.1.1 | Tomato | cytosol | 61.11 | 73.83 |
| Solyc12g099990.1.1 | Tomato | nucleus | 61.11 | 73.83 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 61.11 | 73.83 |
| Bra020155.1-P | Field mustard | cytosol | 61.11 | 73.83 |
| Bra006595.1-P | Field mustard | cytosol | 61.11 | 73.83 |
| Bra012037.1-P | Field mustard | cytosol | 61.11 | 73.83 |
| Bra003251.1-P | Field mustard | cytosol | 61.11 | 73.83 |
| Bra002368.1-P | Field mustard | cytosol | 61.11 | 73.83 |
| Bra014671.1-P | Field mustard | cytosol | 61.11 | 73.83 |
| Bra019453.1-P | Field mustard | cytosol | 61.11 | 73.83 |
| Bra000214.1-P | Field mustard | cytosol | 61.11 | 73.83 |
| AT3G56800.1 | Thale cress | cytosol | 61.11 | 73.83 |
| CDX96148 | Canola | cytosol | 60.56 | 73.15 |
| CDX99690 | Canola | cytosol | 60.56 | 73.15 |
| CDY55678 | Canola | cytosol | 60.56 | 73.15 |
| Bra004166.1-P | Field mustard | cytosol | 60.56 | 73.15 |
| Bra007269.1-P | Field mustard | cytosol | 60.56 | 73.15 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 61.67 | 72.55 |
| CDY27651 | Canola | cytosol | 60.0 | 72.0 |
| CDY12321 | Canola | cytosol | 57.78 | 71.72 |
| Bra034981.1-P | Field mustard | cytosol | 57.78 | 71.72 |
| PGSC0003DMT400046278 | Potato | cytosol | 30.56 | 71.43 |
| PGSC0003DMT400054299 | Potato | cytosol | 44.44 | 70.8 |
| Bra025438.1-P | Field mustard | cytosol | 44.44 | 70.8 |
| AT1G66410.2 | Thale cress | cytosol | 60.56 | 68.55 |
| AT2G41110.2 | Thale cress | cytosol | 61.11 | 68.32 |
| KRH18664 | Soybean | cytosol | 52.22 | 67.14 |
| Bra034317.1-P | Field mustard | cytosol | 63.33 | 63.69 |
| CDY48191 | Canola | cytosol | 63.33 | 63.69 |
| AT2G27030.3 | Thale cress | cytosol | 63.89 | 63.54 |
| CDX77060 | Canola | cytosol | 63.33 | 63.33 |
| TraesCS2B01G113800.2 | Wheat | cytosol | 61.11 | 62.86 |
| TraesCS3B01G219900.1 | Wheat | cytosol | 60.56 | 62.64 |
| TraesCS3B01G365900.1 | Wheat | cytosol | 63.33 | 62.3 |
| AT5G37780.3 | Thale cress | cytosol | 60.56 | 62.29 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 41.67 | 61.48 |
| Os01t0810300-01 | Rice | plasma membrane | 62.78 | 60.43 |
| TraesCS5B01G387200.1 | Wheat | cytosol | 50.0 | 58.06 |
| CDX75970 | Canola | cytosol | 36.67 | 57.89 |
| KRG89812 | Soybean | cytosol, mitochondrion | 52.22 | 56.97 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 53.89 | 56.07 |
| TraesCS5B01G059900.1 | Wheat | cytosol | 50.56 | 54.17 |
| CDY30947 | Canola | cytosol | 62.22 | 53.59 |
| AT3G43810.2 | Thale cress | cytosol | 62.78 | 52.8 |
| TraesCS4B01G131100.1 | Wheat | cytosol | 66.11 | 51.52 |
| CDY57144 | Canola | cytosol | 41.11 | 50.68 |
| CDY21220 | Canola | cytosol | 61.67 | 50.23 |
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 35.56 | 43.24 |
| TraesCS2B01G192400.1 | Wheat | cytosol, mitochondrion | 38.33 | 41.07 |
| AT2G41090.1 | Thale cress | cytosol | 42.78 | 40.31 |
| TraesCS1B01G319300.1 | Wheat | cytosol | 32.78 | 39.33 |
| TraesCS1B01G446400.1 | Wheat | plastid | 35.56 | 36.57 |
| TraesCS7B01G412100.1 | Wheat | cytosol | 36.11 | 35.91 |
| TraesCS1B01G208700.1 | Wheat | cytosol | 33.89 | 31.94 |
| AT2G41100.1 | Thale cress | cytosol | 46.67 | 25.93 |
| TraesCS3B01G246100.1 | Wheat | cytosol | 33.33 | 23.53 |
| TraesCS5B01G387100.1 | Wheat | mitochondrion, nucleus | 0.56 | 0.73 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G137100.1 | EnsemblPlantsGene:TraesCS5B01G137100 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | ncoils:Coil | PANTHER:PTHR23050 |
| PANTHER:PTHR23050:SF165 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | TIGR:cd00051 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:256915105..256917268
Molecular Weight (calculated)
20060.2 Da
IEP (calculated)
4.178
GRAVY (calculated)
-0.778
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MDELTKEQIQ EFREAFSLFD KDGDGTITTK ELGTVMRSLG QHPTEEELKD MVEEVDADGS GSIDFNEFLG LVARQMRGDA EAEEELHEAF RVFDKDNNGF
101: ISLDELRTVM KNLGEKLSED ELNEMLQEAD ADGDGQINYK EFAKVMMAKR RANAEEHGGG EHSGAEHSHN RGGGCPCTIL
101: ISLDELRTVM KNLGEKLSED ELNEMLQEAD ADGDGQINYK EFAKVMMAKR RANAEEHGGG EHSGAEHSHN RGGGCPCTIL
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
Arabidopsis Description
CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.