Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G391600.1 | Wheat | nucleus | 99.18 | 99.18 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 82.04 | 83.4 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 80.0 | 81.33 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 77.55 | 80.51 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 71.84 | 76.86 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 66.94 | 66.13 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 10.61 | 63.41 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 47.76 | 63.24 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 42.04 | 62.8 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 60.0 | 61.0 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 58.78 | 59.75 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 57.55 | 54.02 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 53.47 | 52.19 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 44.08 | 51.18 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 37.55 | 48.94 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 44.9 | 48.46 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 34.69 | 44.5 |
| EES06917 | Sorghum | mitochondrion, nucleus | 40.41 | 38.22 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 43.27 | 38.13 |
| KRG88863 | Soybean | mitochondrion, nucleus | 20.41 | 35.71 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 28.16 | 35.38 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 33.06 | 35.22 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.47 | 35.19 |
| Zm00001d016791_P001 | Maize | mitochondrion | 41.22 | 35.19 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 32.24 | 34.05 |
| KXG38099 | Sorghum | plastid | 43.67 | 33.97 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 31.02 | 32.76 |
| EER91288 | Sorghum | mitochondrion, nucleus | 41.63 | 32.48 |
| PGSC0003DMT400086956 | Potato | nucleus | 19.18 | 31.97 |
| KRG89836 | Soybean | nucleus | 19.18 | 31.54 |
| VIT_14s0060g00300.t01 | Wine grape | nucleus | 30.2 | 31.36 |
| PGSC0003DMT400089787 | Potato | cytosol | 22.04 | 31.03 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 29.39 | 30.77 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 38.78 | 30.65 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 15.51 | 30.4 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 40.0 | 30.34 |
| CDY33537 | Canola | nucleus | 24.08 | 30.1 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 20.0 | 30.06 |
| CDX88234 | Canola | nucleus | 22.45 | 30.05 |
| CDX80580 | Canola | nucleus | 24.49 | 29.7 |
| Bra009913.1-P | Field mustard | nucleus | 24.49 | 29.56 |
| CDY64992 | Canola | mitochondrion, nucleus | 18.37 | 29.22 |
| KRG98152 | Soybean | nucleus | 22.45 | 28.95 |
| KRH30113 | Soybean | nucleus | 20.0 | 28.66 |
| KRH72060 | Soybean | nucleus | 20.0 | 28.66 |
| Solyc01g102260.2.1 | Tomato | nucleus | 28.98 | 28.51 |
| CDY04801 | Canola | mitochondrion, nucleus | 18.78 | 28.4 |
| KRG98150 | Soybean | mitochondrion, nucleus | 19.18 | 28.14 |
| KRG97962 | Soybean | nucleus | 27.35 | 28.03 |
| Bra012335.1-P | Field mustard | mitochondrion | 18.37 | 27.78 |
| Bra024521.1-P | Field mustard | mitochondrion | 18.37 | 27.78 |
| CDY21372 | Canola | mitochondrion | 18.37 | 27.78 |
| CDY25744 | Canola | mitochondrion | 18.37 | 27.78 |
| KRH33740 | Soybean | nucleus | 17.96 | 27.67 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 27.35 | 27.35 |
| KRH30919 | Soybean | nucleus | 26.94 | 27.27 |
| AT5G26630.1 | Thale cress | nucleus | 24.08 | 27.06 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 40.0 | 27.0 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 13.06 | 26.89 |
| KRG98143 | Soybean | nucleus | 22.86 | 26.54 |
| KRH30472 | Soybean | nucleus | 22.86 | 26.42 |
| KRH30476 | Soybean | nucleus | 15.92 | 26.0 |
| PGSC0003DMT400003073 | Potato | cytosol | 11.43 | 25.93 |
| KRG98149 | Soybean | nucleus | 22.45 | 25.82 |
| CDY71896 | Canola | nucleus | 17.96 | 25.58 |
| KRG98148 | Soybean | nucleus | 23.67 | 25.33 |
| KRH30119 | Soybean | cytosol | 16.33 | 24.84 |
| KRH66052 | Soybean | mitochondrion, nucleus | 22.45 | 24.44 |
| AT5G35120.1 | Thale cress | cytosol | 10.61 | 24.3 |
| KRG88915 | Soybean | mitochondrion, nucleus | 20.41 | 24.15 |
| Bra020555.1-P | Field mustard | nucleus | 21.22 | 24.07 |
| CDY05540 | Canola | nucleus | 21.22 | 24.07 |
| CDY25000 | Canola | nucleus | 21.22 | 24.07 |
| KRH66114 | Soybean | nucleus | 19.18 | 23.74 |
| KRH30473 | Soybean | mitochondrion, nucleus | 21.22 | 23.53 |
| KRG98147 | Soybean | mitochondrion, nucleus | 24.08 | 22.96 |
| PGSC0003DMT400089454 | Potato | nucleus | 22.86 | 22.86 |
| KRG98142 | Soybean | nucleus | 24.9 | 22.85 |
| KRH72066 | Soybean | mitochondrion, nucleus | 18.78 | 22.33 |
| AT1G65300.1 | Thale cress | nucleus | 25.31 | 22.3 |
| AT3G05860.1 | Thale cress | nucleus | 22.86 | 21.54 |
| CDY27735 | Canola | nucleus | 23.27 | 21.35 |
| PGSC0003DMT400090586 | Potato | nucleus | 20.41 | 21.28 |
| PGSC0003DMT400095062 | Potato | nucleus | 24.49 | 21.28 |
| AT1G59930.1 | Thale cress | cytosol | 11.43 | 21.21 |
| AT1G65330.1 | Thale cress | nucleus | 24.08 | 21.15 |
| Bra018490.1-P | Field mustard | nucleus | 24.9 | 21.03 |
| CDX97329 | Canola | nucleus | 24.9 | 21.03 |
| Bra029469.1-P | Field mustard | nucleus | 25.71 | 20.72 |
| CDY60402 | Canola | nucleus | 25.71 | 20.72 |
| PGSC0003DMT400088489 | Potato | nucleus | 17.96 | 20.66 |
| PGSC0003DMT400073719 | Potato | nucleus | 21.63 | 20.31 |
| PGSC0003DMT400088654 | Potato | nucleus | 26.94 | 20.18 |
| PGSC0003DMT400090953 | Potato | nucleus | 26.53 | 19.35 |
| PGSC0003DMT400091650 | Potato | nucleus | 20.41 | 19.3 |
| Bra039404.1-P | Field mustard | nucleus | 23.67 | 19.21 |
| AT5G48670.1 | Thale cress | nucleus | 24.9 | 19.0 |
| PGSC0003DMT400095755 | Potato | nucleus | 26.12 | 18.6 |
| CDX80577 | Canola | mitochondrion, nucleus | 22.04 | 17.94 |
| KRH30471 | Soybean | nucleus | 22.04 | 17.82 |
| KRG88914 | Soybean | cytosol | 15.92 | 17.81 |
| CDX88231 | Canola | nucleus | 20.0 | 17.75 |
| CDY38696 | Canola | nucleus | 20.0 | 17.63 |
| AT5G27960.1 | Thale cress | nucleus | 22.86 | 17.5 |
| CDY05207 | Canola | nucleus | 23.67 | 17.37 |
| KRG88862 | Soybean | nucleus | 22.04 | 17.25 |
| CDY18830 | Canola | nucleus | 24.08 | 17.15 |
| PGSC0003DMT400061726 | Potato | nucleus | 22.86 | 17.13 |
| Bra035448.1-P | Field mustard | nucleus | 18.37 | 17.05 |
| PGSC0003DMT400087890 | Potato | cytosol | 7.76 | 16.96 |
| PGSC0003DMT400090516 | Potato | nucleus | 12.24 | 16.95 |
| Bra041022.1-P | Field mustard | nucleus | 22.86 | 16.77 |
| AT2G28700.1 | Thale cress | nucleus | 22.45 | 16.72 |
| Bra035449.1-P | Field mustard | nucleus | 17.96 | 16.67 |
| CDY27734 | Canola | nucleus | 22.86 | 16.67 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 23.67 | 16.62 |
| PGSC0003DMT400088008 | Potato | nucleus | 13.06 | 16.58 |
| CDY71564 | Canola | nucleus | 22.86 | 16.52 |
| AT5G26580.1 | Thale cress | nucleus | 22.86 | 16.23 |
| AT1G31630.1 | Thale cress | mitochondrion | 22.45 | 16.22 |
| KRG98146 | Soybean | nucleus | 21.63 | 16.16 |
| Bra020552.1-P | Field mustard | nucleus | 22.45 | 16.13 |
| AT5G26650.1 | Thale cress | nucleus | 24.08 | 16.12 |
| PGSC0003DMT400077258 | Potato | nucleus | 25.31 | 15.9 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 24.49 | 15.67 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 22.86 | 15.38 |
| CDY70782 | Canola | nucleus | 19.59 | 14.86 |
| PGSC0003DMT400095417 | Potato | cytosol | 7.76 | 14.84 |
| PGSC0003DMT400085256 | Potato | nucleus | 22.45 | 14.55 |
| Bra040248.1-P | Field mustard | nucleus | 24.08 | 14.29 |
| CDY67043 | Canola | nucleus | 22.45 | 14.07 |
| Bra020550.1-P | Field mustard | nucleus | 21.22 | 13.68 |
| CDY05333 | Canola | nucleus | 20.41 | 13.26 |
| CDY05515 | Canola | nucleus | 20.41 | 13.26 |
| Bra020525.1-P | Field mustard | nucleus | 20.41 | 12.66 |
| PGSC0003DMT400086919 | Potato | nucleus | 12.65 | 12.6 |
| PGSC0003DMT400085623 | Potato | nucleus | 10.2 | 12.5 |
| Bra020524.1-P | Field mustard | nucleus | 17.55 | 11.94 |
| CDY05514 | Canola | nucleus | 17.55 | 11.94 |
| AT1G31640.1 | Thale cress | mitochondrion | 22.45 | 11.85 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 7.35 | 11.04 |
| PGSC0003DMT400086447 | Potato | cytosol | 8.57 | 10.94 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 11.84 | 10.28 |
| PGSC0003DMT400094113 | Potato | cytosol | 6.94 | 9.83 |
| Solyc07g043080.1.1 | Tomato | cytosol | 4.9 | 9.68 |
| PGSC0003DMT400094378 | Potato | nucleus | 6.12 | 9.62 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 3.67 | 7.69 |
| PGSC0003DMT400089615 | Potato | cytosol | 6.53 | 6.72 |
| PGSC0003DMT400091747 | Potato | plastid | 3.27 | 5.26 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 4.08 | 4.98 |
| PGSC0003DMT400061722 | Potato | plastid | 2.04 | 4.81 |
| PGSC0003DMT400065010 | Potato | vacuole | 3.67 | 4.5 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| EnsemblPlantsGene:TraesCS6B01G391700 | EnsemblPlants:TraesCS6B01G391700.1 | TIGR:cd00266 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:666307302..666308039
Molecular Weight (calculated)
27263.8 Da
IEP (calculated)
8.574
GRAVY (calculated)
-0.473
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKKSIRKK VTLKYIANDS SRRTRFRKRL GGLMKKAAQL ATLCDVRSCV VVYGEREAEP KVFPSHAEAV DILNEFKSMP ELGHCKKTMD QEAFLTQRIA
101: KLQDQVYKAR RECQDSEIRY LLYNIMNGKH PGLVGLSVEE LVRVGWKVDE LLKSLGERME KNHVQAPPPA PCVSTGNIDM GSPTQYLASP HQQEYWLDMT
201: SSGGGVDTQV GCNTSHDGAS FSSGDLMMQI QSSDLGFSSS PFPPM
101: KLQDQVYKAR RECQDSEIRY LLYNIMNGKH PGLVGLSVEE LVRVGWKVDE LLKSLGERME KNHVQAPPPA PCVSTGNIDM GSPTQYLASP HQQEYWLDMT
201: SSGGGVDTQV GCNTSHDGAS FSSGDLMMQI QSSDLGFSSS PFPPM
001: MKRKMKLSLI ENSVSRKTTF TKRKKGMTKK LTELVTLCGV EACAVVYSPF NSIPEAWPSR EGVEDVVSKF MELSVLDRTK KMVDQETFIS QRIAKEKEQL
101: QKLRDENHNS QIRELMFGCL KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD GPMFQYHNQN QQKPVQFQYQ
201: ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL
101: QKLRDENHNS QIRELMFGCL KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD GPMFQYHNQN QQKPVQFQYQ
201: ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL
Arabidopsis Description
PHE2MADS-box transcription factor PHERES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.