Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G245700.1 | Wheat | nucleus | 92.0 | 95.83 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 64.0 | 84.71 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 80.89 | 73.39 |
| OQU93000 | Sorghum | nucleus | 74.67 | 69.14 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 69.33 | 68.72 |
| Os03t0215400-01 | Rice | nucleus | 76.0 | 66.54 |
| Zm00001d048082_P001 | Maize | nucleus | 72.89 | 65.08 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 68.89 | 64.32 |
| Zm00001d028217_P001 | Maize | nucleus | 72.0 | 62.79 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 60.0 | 59.47 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 53.33 | 50.85 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 53.78 | 50.84 |
| Solyc03g114840.2.1 | Tomato | nucleus | 54.22 | 49.59 |
| PGSC0003DMT400063315 | Potato | nucleus | 53.78 | 49.19 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 53.33 | 48.78 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 52.0 | 48.75 |
| KRH70973 | Soybean | nucleus | 52.0 | 47.95 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 20.44 | 47.42 |
| KRH75123 | Soybean | nucleus | 51.11 | 46.75 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 52.0 | 46.43 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 47.56 | 43.15 |
| AT2G03710.1 | Thale cress | nucleus | 48.89 | 42.64 |
| CDY04164 | Canola | nucleus | 48.0 | 41.86 |
| CDY02978 | Canola | nucleus | 46.67 | 41.02 |
| Bra025126.1-P | Field mustard | nucleus | 46.67 | 40.86 |
| Bra026543.1-P | Field mustard | nucleus | 48.44 | 40.52 |
| CDY51202 | Canola | nucleus | 46.22 | 40.47 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 48.0 | 39.71 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 45.33 | 38.2 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 43.11 | 38.19 |
| Bra017376.1-P | Field mustard | nucleus | 40.0 | 37.04 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 38.67 | 34.8 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 41.78 | 34.69 |
| CDY33113 | Canola | nucleus | 46.67 | 33.98 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 36.0 | 33.75 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 37.33 | 33.33 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 34.22 | 33.05 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 33.78 | 33.04 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 33.33 | 32.61 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 38.67 | 32.34 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 32.89 | 30.71 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 31.11 | 29.66 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 30.67 | 29.49 |
| CDY45709 | Canola | nucleus | 22.67 | 29.48 |
| CDY49686 | Canola | nucleus | 22.22 | 28.9 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 31.11 | 28.81 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 34.67 | 28.47 |
| TraesCS5D01G002100.1 | Wheat | nucleus | 28.44 | 28.44 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF206 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS4D01G243700 | EnsemblPlants:TraesCS4D01G243700.1 | TIGR:cd00265 |
Description
No Description!
Coordinates
chr4D:-:407116333..407128454
Molecular Weight (calculated)
26094.1 Da
IEP (calculated)
8.357
GRAVY (calculated)
-0.813
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVEMRR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS SCMYRTLERY RTCNSNSQEA TPPLENEINY QEYLKLKTRV
101: EFLQSSQRNI LGEDLGPLSM KELDQIENQI DASLKHIRSK KNQVLLDQLF ELKSKEQELQ DENNDLRKKL QDTTSCCGDN AVHMSWQDGG QCSSRVLHPE
201: HDTSMQIGYP QAYMDQLNKQ RSRGF
101: EFLQSSQRNI LGEDLGPLSM KELDQIENQI DASLKHIRSK KNQVLLDQLF ELKSKEQELQ DENNDLRKKL QDTTSCCGDN AVHMSWQDGG QCSSRVLHPE
201: HDTSMQIGYP QAYMDQLNKQ RSRGF
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.