Factsheet for TraesCS5D01G002100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G002500.1	Wheat	mitochondrion, nucleus	40.44	97.85
HORVU5Hr1G000480.1	Barley	nucleus	67.56	80.0
TraesCS7D01G107200.1	Wheat	nucleus	24.44	56.7
TraesCS2D01G325000.1	Wheat	nucleus	44.89	42.08
TraesCS5D01G002200.2	Wheat	nucleus	40.0	38.63
TraesCS7D01G106900.1	Wheat	nucleus	39.11	38.26
TraesCS7D01G106600.1	Wheat	nucleus	39.11	38.26
TraesCS6D01G273500.2	Wheat	nucleus	40.0	37.34
TraesCS1D01G045500.1	Wheat	nucleus	39.56	36.63
TraesCS1D01G045600.1	Wheat	nucleus	37.33	35.9
TraesCS1D01G045700.1	Wheat	nucleus	37.33	35.59
TraesCS7D01G120600.1	Wheat	nucleus	29.78	29.52
TraesCS7D01G120500.1	Wheat	nucleus	28.89	28.63
TraesCS4D01G243700.1	Wheat	nucleus	28.44	28.44
TraesCS5D01G401700.1	Wheat	nucleus	29.78	28.39
TraesCS1D01G262700.1	Wheat	nucleus	30.67	27.6
TraesCS7D01G261600.1	Wheat	nucleus	29.78	27.02
TraesCS4D01G276100.1	Wheat	nucleus	28.89	26.97
TraesCS5D01G118200.1	Wheat	nucleus	29.78	26.59
TraesCS2D01G262700.1	Wheat	nucleus	32.0	26.57
TraesCS5D01G294500.1	Wheat	nucleus	29.33	26.19
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	29.33	25.98
TraesCS2D01G181400.3	Wheat	nucleus	30.22	25.47
TraesCS1D01G127700.1	Wheat	nucleus	30.22	25.28
TraesCS3D01G140200.2	Wheat	nucleus	30.22	24.82
TraesCS4D01G245200.1	Wheat	nucleus	26.67	24.19
TraesCS6D01G240200.3	Wheat	nucleus	28.89	23.9

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS5D01G002100	EnsemblPlants:TraesCS5D01G002100.1	TIGR:cd00265
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:2286407..2289277

Molecular Weight (calculated)

26087.0 Da

IEP (calculated)

10.369

GRAVY (calculated)

-0.480

Length

225 amino acids

Sequence
(BLAST)

001: MARGKIVIRR IEKMSSRQVT FSKRRRGLLK KARELAILCD VQVGVIVFSS TGRLYEYASS TTSASTGMPS IIHKYQSAQE HQQLLNPVSQ IMFWEGEVRK
101: LQQEMQMLQE HHRTLMGERL SNLGVNDLCL LENQLEKSLR CIREKKNIQL SEEIKLIHER NLEIKNKLEK KESSNRENQL IQLCPLIPEH LKYPNDNVPA
201: TPTSIRRATI IMGFQITTNR FFPSV

Best Arabidopsis Sequence Match ( AT3G57230.1 )
(BLAST)

001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA

Arabidopsis Description

AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.