Factsheet for TraesCS5D01G401700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G396700.1	Wheat	nucleus	94.92	94.92
HORVU5Hr1G095710.1	Barley	nucleus	94.49	94.09
TraesCS5A01G391800.1	Wheat	nucleus	92.8	92.02
KXG37536	Sorghum	nucleus	80.08	78.42
Os03t0753100-01	Rice	nucleus	78.81	77.82
Zm00001d034047_P007	Maize	nucleus	78.39	77.08
TraesCS4D01G243700.1	Wheat	nucleus	50.85	53.33
TraesCS7D01G120500.1	Wheat	nucleus	50.42	52.42
TraesCS7D01G120600.1	Wheat	nucleus	48.73	50.66
Solyc12g038510.1.1	Tomato	nucleus	52.97	50.0
TraesCS7D01G107200.1	Wheat	nucleus	19.92	48.45
TraesCS4D01G245200.1	Wheat	nucleus	50.85	48.39
TraesCS4D01G276100.1	Wheat	nucleus	49.15	48.13
TraesCS5D01G294500.1	Wheat	nucleus	49.58	46.43
TraesCS7D01G261600.1	Wheat	nucleus	45.76	43.55
TraesCS6D01G240200.3	Wheat	nucleus	47.03	40.81
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	42.37	39.37
TraesCS2D01G181400.3	Wheat	nucleus	42.37	37.45
TraesCS2D01G262700.1	Wheat	nucleus	41.95	36.53
TraesCS7D01G106900.1	Wheat	nucleus	34.32	35.22
TraesCS5D01G002200.2	Wheat	nucleus	34.32	34.76
TraesCS7D01G106600.1	Wheat	nucleus	33.05	33.91
TraesCS2D01G325000.1	Wheat	nucleus	33.9	33.33
TraesCS1D01G127700.1	Wheat	nucleus	37.29	32.71
TraesCS6D01G273500.2	Wheat	nucleus	33.05	32.37
TraesCS5D01G118200.1	Wheat	nucleus	34.32	32.14
TraesCS1D01G262700.1	Wheat	nucleus	33.9	32.0
TraesCS1D01G045700.1	Wheat	nucleus	31.36	31.36
TraesCS1D01G045500.1	Wheat	nucleus	32.2	31.28
TraesCS1D01G045600.1	Wheat	nucleus	30.08	30.34
TraesCS5D01G002100.1	Wheat	nucleus	28.39	29.78
TraesCS3D01G140200.2	Wheat	nucleus	33.47	28.83

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF162	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS5D01G401700	EnsemblPlants:TraesCS5D01G401700.1	TIGR:cd00265
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:467417946..467424850

Molecular Weight (calculated)

27208.7 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.634

Length

236 amino acids

Sequence
(BLAST)

001: MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALVLFSH AGRLYQFSSS SNMFKTLERY QRYIFASQDA VAPTSDEMQN NYLEYMELKA
101: RVEVLQHSQR NLLGEDLAPL STTELDQLES QVGKTLRQIR SRKTQVLLDE LCDLKRKEQM LQDANMTLKR KLGEIQVEAT PDPQQQQQQM WQGDRGVPPH
201: TPPQPEHFFQ ALECYPSLQP VFRGTDVNQP PPAWMA

Best Arabidopsis Sequence Match ( AT1G24260.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI

Arabidopsis Description

SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.