Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37536 | Sorghum | nucleus | 95.0 | 94.61 |
| Os03t0753100-01 | Rice | nucleus | 79.17 | 79.5 |
| TraesCS5B01G396700.1 | Wheat | nucleus | 77.92 | 79.24 |
| HORVU5Hr1G095710.1 | Barley | nucleus | 77.5 | 78.48 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 77.08 | 78.39 |
| TraesCS5A01G391800.1 | Wheat | nucleus | 76.67 | 77.31 |
| Zm00001d045231_P002 | Maize | nucleus | 52.5 | 56.0 |
| Solyc12g038510.1.1 | Tomato | nucleus | 56.25 | 54.0 |
| Zm00001d003409_P001 | Maize | nucleus | 18.75 | 51.72 |
| Zm00001d048082_P001 | Maize | nucleus | 51.25 | 48.81 |
| Zm00001d021057_P001 | Maize | nucleus | 50.0 | 48.58 |
| Zm00001d028217_P001 | Maize | nucleus | 52.08 | 48.45 |
| Zm00001d006094_P001 | Maize | nucleus | 50.0 | 47.81 |
| Zm00001d031620_P001 | Maize | nucleus | 47.92 | 45.1 |
| Zm00001d022088_P004 | Maize | nucleus | 43.75 | 40.7 |
| Zm00001d051465_P002 | Maize | nucleus | 47.08 | 38.57 |
| Zm00001d018667_P003 | Maize | nucleus | 43.33 | 38.38 |
| Zm00001d013259_P002 | Maize | nucleus | 43.75 | 37.63 |
| Zm00001d045227_P001 | Maize | nucleus | 20.42 | 36.3 |
| Zm00001d034045_P003 | Maize | nucleus | 42.92 | 35.4 |
| Zm00001d017614_P003 | Maize | nucleus | 40.83 | 35.38 |
| Zm00001d016957_P003 | Maize | nucleus | 34.58 | 34.58 |
| Zm00001d017932_P002 | Maize | nucleus | 33.33 | 33.9 |
| Zm00001d007949_P001 | Maize | nucleus | 42.92 | 33.77 |
| Zm00001d023955_P003 | Maize | nucleus | 36.25 | 32.83 |
| Zm00001d023736_P001 | Maize | nucleus | 34.58 | 32.3 |
| Zm00001d039434_P001 | Maize | nucleus | 35.0 | 32.06 |
| Zm00001d042591_P002 | Maize | nucleus | 34.58 | 30.97 |
| Zm00001d041781_P001 | Maize | nucleus | 35.42 | 29.62 |
| Zm00001d037737_P001 | Maize | nucleus | 35.42 | 27.78 |
| Zm00001d050897_P002 | Maize | nucleus | 34.17 | 25.95 |
| Zm00001d008882_P001 | Maize | nucleus | 32.08 | 23.4 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:542038 | UniProt:B4FZ68 | EMBL:BT042406 | ncoils:Coil |
| EMBL:EU961799 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| EMBL:KJ726932 | InterPro:MADS_MEF2-like | ProteinID:ONM09411.1 | ProteinID:ONM09412.1 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF162 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00017B7942 |
| EnsemblPlantsGene:Zm00001d034047 | EnsemblPlants:Zm00001d034047_P007 | EnsemblPlants:Zm00001d034047_T007 | : | : | : |
Description
Zea mays MADS24 Zea mays MADS24
Coordinates
chr1:-:282303560..282312748
Molecular Weight (calculated)
27336.8 Da
IEP (calculated)
8.303
GRAVY (calculated)
-0.568
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS SNLLKTLERY QRYIYASADA AVPSSDQMQN NYQEYVKLKA
101: RVEVLQHSQR NLLGEDLALL SPSELDQLEN QVDKTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLGEFEAEAA SPPQLAWQGE GGMLSHDPPQ
201: PEHFFQALES NPCLQPTYHT MDMNQQPVPA PGGCYPAWMS
101: RVEVLQHSQR NLLGEDLALL SPSELDQLEN QVDKTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLGEFEAEAA SPPQLAWQGE GGMLSHDPPQ
201: PEHFFQALES NPCLQPTYHT MDMNQQPVPA PGGCYPAWMS
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV
Arabidopsis Description
AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.