Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85464 | Sorghum | nucleus | 85.59 | 83.47 |
| Os02t0731200-01 | Rice | nucleus | 76.27 | 74.69 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 74.58 | 73.03 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 74.15 | 72.61 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 73.31 | 71.78 |
| Zm00001d003409_P001 | Maize | nucleus | 26.27 | 71.26 |
| HORVU6Hr1G073040.2 | Barley | nucleus | 72.03 | 70.54 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 63.14 | 61.07 |
| Zm00001d016957_P003 | Maize | nucleus | 59.75 | 58.75 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 58.05 | 58.3 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 57.63 | 55.51 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 55.08 | 55.08 |
| CDY49287 | Canola | nucleus | 55.51 | 54.58 |
| Bra017638.1-P | Field mustard | nucleus | 55.51 | 54.58 |
| CDX72465 | Canola | nucleus | 55.08 | 54.17 |
| AT3G57230.1 | Thale cress | nucleus | 54.24 | 53.33 |
| CDX75412 | Canola | nucleus | 53.39 | 52.5 |
| CDX69036 | Canola | nucleus | 53.39 | 52.5 |
| KRH42047 | Soybean | nucleus | 50.42 | 49.38 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 26.69 | 42.57 |
| Bra011509.1-P | Field mustard | nucleus | 50.0 | 40.69 |
| Zm00001d050897_P002 | Maize | nucleus | 54.24 | 40.51 |
| Zm00001d045227_P001 | Maize | nucleus | 21.19 | 37.04 |
| Zm00001d045231_P002 | Maize | nucleus | 32.63 | 34.22 |
| Zm00001d034047_P007 | Maize | nucleus | 33.9 | 33.33 |
| Zm00001d042591_P002 | Maize | nucleus | 37.71 | 33.21 |
| Zm00001d022088_P004 | Maize | nucleus | 33.9 | 31.01 |
| Zm00001d048082_P001 | Maize | nucleus | 32.63 | 30.56 |
| Zm00001d018667_P003 | Maize | nucleus | 34.75 | 30.26 |
| Zm00001d031620_P001 | Maize | nucleus | 32.2 | 29.8 |
| Zm00001d039434_P001 | Maize | nucleus | 33.05 | 29.77 |
| Zm00001d021057_P001 | Maize | nucleus | 30.93 | 29.55 |
| Zm00001d013259_P002 | Maize | nucleus | 34.75 | 29.39 |
| Zm00001d023736_P001 | Maize | nucleus | 31.78 | 29.18 |
| Zm00001d006094_P001 | Maize | nucleus | 30.93 | 29.08 |
| Zm00001d028217_P001 | Maize | nucleus | 31.78 | 29.07 |
| Zm00001d023955_P003 | Maize | nucleus | 32.63 | 29.06 |
| Zm00001d007949_P001 | Maize | nucleus | 35.59 | 27.54 |
| Zm00001d041781_P001 | Maize | nucleus | 33.47 | 27.53 |
| Zm00001d034045_P003 | Maize | nucleus | 33.05 | 26.8 |
| Zm00001d037737_P001 | Maize | nucleus | 34.75 | 26.8 |
| Zm00001d051465_P002 | Maize | nucleus | 33.05 | 26.62 |
| Zm00001d017614_P003 | Maize | nucleus | 27.12 | 23.1 |
| Zm00001d008882_P001 | Maize | nucleus | 31.36 | 22.49 |
Protein Annotations
| EntrezGene:103627685 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1D6HJ96 | ProteinID:AQK74551.1 | ncoils:Coil |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0008442086 | EnsemblPlantsGene:Zm00001d017932 | EnsemblPlants:Zm00001d017932_P002 | EnsemblPlants:Zm00001d017932_T002 | : |
Description
MADS-transcription factor 26Agamous-like MADS-box protein AGL16
Coordinates
chr5:+:210273759..210285475
Molecular Weight (calculated)
26760.1 Da
IEP (calculated)
9.864
GRAVY (calculated)
-0.684
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELSILCD AEVGLIIFSS TGRLYDFSNT NMKAVIDRYG KAKDEQLGKN DATSELMLWQ REAASLRQQL
101: HNLQESHKQL MGEELSGLGV RDLQSLENQI GMSLHSIRMR KDHLLKSEIE VLQRKGSLIH QENMELSRRV HFMSQQKEEL YRKASEPRGA AGASSSTPYS
201: FCIATQQADA PVNLEQRHSQ PKEGNRCQEF MAPELG
101: HNLQESHKQL MGEELSGLGV RDLQSLENQI GMSLHSIRMR KDHLLKSEIE VLQRKGSLIH QENMELSRRV HFMSQQKEEL YRKASEPRGA AGASSSTPYS
201: FCIATQQADA PVNLEQRHSQ PKEGNRCQEF MAPELG
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.