Factsheet for Bra011509.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra000393.1-P
Bra003919.1-P
Bra004007.1-P
Bra004071.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra007138.1-P
Bra007139.1-P
Bra007972.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra013364.1-P
Bra015129.1-P
Bra016128.1-P
Bra016129.1-P
Bra017638.1-P
Bra018741.1-P
Bra018767.1-P
Bra019221.1-P
Bra020923.1-P
Bra021470.1-P
Bra028019.1-P
Bra028020.1-P
Bra029424.1-P
Bra038326.1-P
Bra039170.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57230.1	Bra004007.1-P	AT1G69120.1	15805477
AT3G57230.1	Bra004361.1-P	AT1G69120.1	15805477
AT3G57230.1	Bra038326.1-P	AT1G69120.1	15805477
AT3G57230.1	Bra003919.1-P	AT1G71692.1	15805477
AT3G57230.1	Bra007972.1-P	AT1G71692.1	15805477
AT3G57230.1	Bra016128.1-P	AT1G71692.1	15805477
AT3G57230.1	Bra016129.1-P	AT1G71692.1	15805477
AT3G57230.1	Bra000392.1-P	AT2G45650.1	15805477
AT3G57230.1	Bra004927.1-P	AT2G45650.1	15805477
AT3G57230.1	Bra000393.1-P	AT2G45660.1	15805477
AT3G57230.1	Bra004928.1-P	AT2G45660.1	15805477
AT3G57230.1	Bra039324.1-P	AT2G45660.1	15805477
AT3G57230.1	Bra021470.1-P	AT3G02310.1	15805477
AT3G57230.1	Bra039170.1-P	AT3G02310.1	15805477
AT3G57230.1	Bra011509.1-P	AT3G57230.1	15805477
AT3G57230.1	Bra017638.1-P	AT3G57230.1	15805477
AT3G57230.1	Bra029424.1-P	AT4G11880.1	15805477
AT3G57230.1	Bra012564.1-P	AT4G18960.1	15805477
AT3G57230.1	Bra013364.1-P	AT4G18960.1	15805477
AT3G57230.1	Bra019221.1-P	AT4G24540.1	15805477
AT3G57230.1	Bra010623.1-P	AT4G37940.1	15805477
AT3G57230.1	Bra011797.1-P	AT4G37940.1	15805477
AT3G57230.1	Bra004071.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra007138.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra007139.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra015129.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra018741.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra018767.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra020923.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra028019.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra028020.1-P	AT5G27070.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75412	Canola	nucleus	76.9	92.92
CDX69036	Canola	nucleus	75.86	91.67
AT3G57230.1	Thale cress	nucleus	67.24	81.25
Bra017638.1-P	Field mustard	nucleus	67.24	81.25
Zm00001d003409_P001	Maize	nucleus	21.72	72.41
TraesCS7D01G107200.1	Wheat	nucleus	21.03	62.89
TraesCSU01G209900.1	Wheat	nucleus	20.34	60.82
Os08t0431900-00	Rice	nucleus	32.41	59.12
GSMUA_Achr3P07310_001	Banana	nucleus	49.31	58.61
Bra010623.1-P	Field mustard	nucleus	42.07	57.01
Bra011797.1-P	Field mustard	nucleus	44.48	56.58
OQU85202	Sorghum	nucleus	45.86	55.42
Os02t0579600-00	Rice	nucleus	45.52	55.0
Zm00001d016957_P003	Maize	nucleus	44.83	54.17
TraesCS2A01G337900.1	Wheat	nucleus	44.48	53.75
TraesCS2D01G325000.1	Wheat	nucleus	44.48	53.75
Bra030222.1-P	Field mustard	nucleus	42.07	53.74
GSMUA_Achr7P12610_001	Banana	nucleus	43.45	53.62
GSMUA_Achr9P15540_001	Banana	nucleus	45.17	53.47
GSMUA_Achr5P24560_001	Banana	nucleus	43.45	53.39
Os06t0347700-00	Rice	nucleus	26.9	53.06
Bra039921.1-P	Field mustard	nucleus	41.38	52.86
TraesCS2B01G344000.1	Wheat	nucleus	43.45	52.5
Os02t0731200-01	Rice	nucleus	43.45	52.28
TraesCS6B01G322700.2	Wheat	nucleus	42.76	51.45
HORVU6Hr1G073040.2	Barley	nucleus	42.76	51.45
OQU85464	Sorghum	nucleus	42.76	51.24
Os04t0304400-01	Rice	nucleus	40.0	51.1
OQU81712	Sorghum	nucleus	42.07	51.05
TraesCS6D01G273500.2	Wheat	nucleus	42.41	51.04
TraesCS6A01G292300.2	Wheat	nucleus	42.41	51.04
HORVU5Hr1G000370.3	Barley	nucleus	36.21	50.72
OQU80503	Sorghum	nucleus	40.0	50.66
Zm00001d017932_P002	Maize	nucleus	40.69	50.0
TraesCS5B01G002400.1	Wheat	nucleus	39.31	49.14
TraesCS7B01G009500.1	Wheat	nucleus	38.28	48.26
TraesCS7B01G009800.1	Wheat	nucleus	38.28	48.26
HORVU7Hr1G023940.2	Barley	nucleus	38.28	48.26
TraesCS7A01G111900.1	Wheat	nucleus	37.93	47.83
TraesCS5D01G002200.2	Wheat	nucleus	38.28	47.64
TraesCS7A01G111800.1	Wheat	nucleus	37.59	47.39
TraesCS7D01G106600.1	Wheat	nucleus	37.59	47.39
TraesCS7D01G106900.1	Wheat	nucleus	37.59	47.39
TraesCS1A01G045000.1	Wheat	nucleus	31.38	45.96
TraesCS7A01G111700.1	Wheat	nucleus	37.24	45.38
Solyc01g106170.2.1	Tomato	mitochondrion	23.1	45.27
KRH42047	Soybean	nucleus	36.21	43.57
TraesCS1D01G045700.1	Wheat	nucleus	35.17	43.22
HORVU7Hr1G024000.2	Barley	nucleus	39.66	43.07
TraesCS1D01G045600.1	Wheat	nucleus	34.14	42.31
HORVU2Hr1G080490.1	Barley	nucleus, plastid	44.48	42.16
TraesCS1B01G058100.1	Wheat	nucleus	35.17	41.98
TraesCS1B01G058300.1	Wheat	nucleus	34.14	41.95
TraesCS1A01G044900.1	Wheat	nucleus	34.83	41.56
Zm00001d050897_P002	Maize	nucleus	45.17	41.46
TraesCS1B01G058200.1	Wheat	nucleus	31.72	41.26
TraesCS1D01G045500.1	Wheat	nucleus	34.48	41.15
HORVU1Hr1G008290.4	Barley	nucleus	33.45	40.42
Bra040719.1-P	Field mustard	nucleus	22.76	38.82
Bra025411.1-P	Field mustard	nucleus	22.76	37.5
HORVU1Hr1G008300.3	Barley	nucleus	35.86	36.62
Bra037895.1-P	Field mustard	nucleus	26.9	33.91
Bra004361.1-P	Field mustard	nucleus	21.72	33.33
Bra000696.1-P	Field mustard	nucleus	26.21	32.9
Bra007419.1-P	Field mustard	nucleus	26.55	31.43
Bra006322.1-P	Field mustard	nucleus	26.21	30.4
Bra004716.1-P	Field mustard	nucleus	25.52	30.33
Bra012564.1-P	Field mustard	nucleus	26.21	30.28
Bra032814.1-P	Field mustard	nucleus	26.21	30.04
Bra029347.1-P	Field mustard	nucleus	24.83	30.0
Bra039170.1-P	Field mustard	nucleus	25.86	30.0
Bra030032.1-P	Field mustard	nucleus	25.86	29.76
Bra008674.1-P	Field mustard	nucleus	25.86	29.76
Bra021470.1-P	Field mustard	nucleus	25.86	29.76
Bra013364.1-P	Field mustard	nucleus	25.86	29.76
Bra035952.1-P	Field mustard	nucleus	24.48	29.46
Bra012997.1-P	Field mustard	nucleus	24.48	29.46
Bra014552.1-P	Field mustard	nucleus	24.83	29.03
Bra010955.1-P	Field mustard	nucleus	24.14	28.69
Bra004927.1-P	Field mustard	nucleus	23.79	28.51
Bra000392.1-P	Field mustard	nucleus	24.83	28.02
Bra036201.1-P	Field mustard	nucleus	23.79	27.82
Bra011021.1-P	Field mustard	nucleus	24.14	27.56
Bra014454.1-P	Field mustard	nucleus	21.72	27.39
Bra038326.1-P	Field mustard	nucleus	24.14	27.34
Bra025126.1-P	Field mustard	nucleus	23.79	26.85
Bra003356.1-P	Field mustard	nucleus	24.83	26.37
Bra026543.1-P	Field mustard	nucleus	24.14	26.02
Bra004007.1-P	Field mustard	nucleus	23.1	24.72
Bra017376.1-P	Field mustard	nucleus	19.31	23.05

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra011509	EnsemblPlants:Bra011509.1	EnsemblPlants:Bra011509.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4D4V2
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF263	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025458C8	:	:	:

Description

AT3G57230 (E=1e-059) AGL16 | AGL16 (AGAMOUS-LIKE 16); transcription factor

Coordinates

chrA01:+:1885257..1888021

Molecular Weight (calculated)

32869.6 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.444

Length

290 amino acids

Sequence
(BLAST)

001: MGRGKIAIKR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYEFSSS SMKSIIDRYS EAKCETSSEI NPASEIKVLG AFSLLQLHYH
101: VSNFDTSQAD PELILEVVLA KGGRDSKATA TQLTRKPPLL WKKFAYSQVM EEELVLGRQM MGEELSGLSV EDLQKLENQL ELSLHDVRMK KDQMLLEEIQ
201: ELNREGNLLH QENLDLHKKL NLMRQQNMEL HKKVSEVEGV KSSEKISLLT NGLGMRDNSS EHVHLQLSQP LQHDETHSKA IQLSYFSFIS

Best Arabidopsis Sequence Match ( AT3G57230.4 )
(BLAST)

001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA

Arabidopsis Description

AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.