Factsheet for Bra004007.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra000393.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra009436.1-P
Bra009911.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra017376.1-P
Bra017638.1-P
Bra019221.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra021470.1-P
Bra024372.1-P
Bra025126.1-P
Bra026543.1-P
Bra029424.1-P
Bra030228.1-P
Bra031905.1-P
Bra032192.1-P
Bra036931.1-P
Bra038326.1-P
Bra038511.1-P
Bra039170.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69120.1	Bra009911.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra020524.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra020525.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra020550.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra020552.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra009911.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra020524.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra020525.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra020550.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra020552.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra032192.1-P	AT1G43850.1	16854969
AT1G69120.1	Bra036931.1-P	AT1G43850.1	16854969
AT1G69120.1	Bra009436.1-P	AT1G46408.1	15805477
AT1G69120.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G69120.1	Bra004007.1-P	AT1G69120.1	15604664
AT1G69120.1	Bra004361.1-P	AT1G69120.1	15604664
AT1G69120.1	Bra038326.1-P	AT1G69120.1	15604664
AT1G69120.1	Bra017376.1-P	AT2G03710.1	15805477
AT1G69120.1	Bra025126.1-P	AT2G03710.1	15805477
AT1G69120.1	Bra026543.1-P	AT2G03710.1	15805477
AT1G69120.1	Bra030228.1-P	AT2G22540.1	11439126
AT1G69120.1	Bra038511.1-P	AT2G22540.1	11439126
AT1G69120.1	Bra030228.1-P	AT2G22540.1	15805477
AT1G69120.1	Bra038511.1-P	AT2G22540.1	15805477
AT1G69120.1	Bra000392.1-P	AT2G45650.1	15805477
AT1G69120.1	Bra004927.1-P	AT2G45650.1	15805477
AT1G69120.1	Bra000393.1-P	AT2G45660.1	11439126
AT1G69120.1	Bra004928.1-P	AT2G45660.1	11439126
AT1G69120.1	Bra039324.1-P	AT2G45660.1	11439126
AT1G69120.1	Bra000393.1-P	AT2G45660.1	15805477
AT1G69120.1	Bra004928.1-P	AT2G45660.1	15805477
AT1G69120.1	Bra039324.1-P	AT2G45660.1	15805477
AT1G69120.1	Bra021470.1-P	AT3G02310.1	15604664
AT1G69120.1	Bra039170.1-P	AT3G02310.1	15604664
AT1G69120.1	Bra011509.1-P	AT3G57230.1	15805477
AT1G69120.1	Bra017638.1-P	AT3G57230.1	15805477
AT1G69120.1	Bra029424.1-P	AT4G11880.1	15805477
AT1G69120.1	Bra019221.1-P	AT4G24540.1	11439126
AT1G69120.1	Bra019221.1-P	AT4G24540.1	15805477
AT1G69120.1	Bra010623.1-P	AT4G37940.1	15805477
AT1G69120.1	Bra011797.1-P	AT4G37940.1	15805477
AT1G69120.1	Bra020600.1-P	AT5G27130.1	15805477
AT1G69120.1	Bra024372.1-P	AT5G65260.1	11439126
AT1G69120.1	Bra031905.1-P	AT5G65260.1	11439126

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04265	Canola	nucleus	98.52	96.39
CDY07357	Canola	nucleus	100.0	93.77
Bra038326.1-P	Field mustard	nucleus	88.19	93.36
AT1G69120.1	Thale cress	nucleus	86.72	91.8
Bra004361.1-P	Field mustard	nucleus	60.52	86.77
Bra011021.1-P	Field mustard	nucleus	69.0	73.62
KRH07467	Soybean	nucleus	63.47	72.88
KRH45412	Soybean	nucleus	61.62	70.76
KRH70974	Soybean	nucleus	57.93	64.61
PGSC0003DMT400072888	Potato	nucleus	56.09	62.3
Solyc05g056620.1.1	Tomato	nucleus	56.09	62.3
Bra025411.1-P	Field mustard	nucleus	38.01	58.52
GSMUA_Achr6P00050_001	Banana	nucleus	50.18	56.2
EER90862	Sorghum	nucleus	49.45	54.69
GSMUA_Achr2P13650_001	Banana	nucleus	49.45	54.47
GSMUA_Achr4P23540_001	Banana	nucleus	48.71	53.23
Bra029347.1-P	Field mustard	nucleus	46.49	52.5
TraesCS5A01G391700.1	Wheat	nucleus	46.86	52.05
Os03t0752800-02	Rice	nucleus	46.86	51.63
Bra012997.1-P	Field mustard	nucleus	45.76	51.45
GSMUA_Achr8P04330_001	Banana	nucleus	46.49	51.43
GSMUA_Achr7P00460_001	Banana	nucleus	47.23	51.2
Bra035952.1-P	Field mustard	nucleus	45.39	51.04
EER97510	Sorghum	nucleus	46.86	50.2
EER95753	Sorghum	nucleus	49.82	50.0
Os07t0108900-02	Rice	nucleus	49.08	49.81
TraesCS5B01G396600.2	Wheat	nucleus	46.13	49.8
Zm00001d022088_P004	Maize	nucleus	47.23	49.61
Zm00001d018667_P003	Maize	nucleus	49.45	49.45
GSMUA_Achr10P...	Banana	nucleus	51.66	49.12
TraesCS2D01G262700.1	Wheat	nucleus	49.08	49.08
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	45.76	48.82
TraesCS2B01G281000.1	Wheat	nucleus	49.08	48.54
TraesCS2A01G261200.2	Wheat	nucleus	49.08	48.54
GSMUA_Achr3P30440_001	Banana	nucleus	40.96	48.26
Os07t0605200-01	Rice	nucleus	43.54	47.39
Zm00001d013259_P002	Maize	nucleus	48.71	47.31
TraesCS2D01G181400.3	Wheat	nucleus	45.02	45.69
TraesCS2B01G200800.1	Wheat	nucleus	45.02	45.69
GSMUA_Achr3P02280_001	Banana	nucleus	44.28	45.63
Bra036201.1-P	Field mustard	nucleus	41.7	45.56
TraesCS2A01G174300.3	Wheat	nucleus	44.65	45.32
Zm00001d034045_P003	Maize	nucleus	47.97	44.67
Zm00001d007949_P001	Maize	nucleus	49.82	44.26
GSMUA_Achr3P25280_001	Banana	nucleus	43.17	43.98
HORVU2Hr1G063800.7	Barley	nucleus, plastid	48.71	43.14
HORVU5Hr1G095630.3	Barley	nucleus, plastid	47.97	42.35
Bra010955.1-P	Field mustard	nucleus	35.79	39.75
Bra006322.1-P	Field mustard	nucleus	36.53	39.6
Bra030032.1-P	Field mustard	nucleus	36.53	39.29
Bra008674.1-P	Field mustard	nucleus	36.53	39.29
Bra021470.1-P	Field mustard	nucleus	36.16	38.89
Bra039170.1-P	Field mustard	nucleus	35.42	38.4
Bra032814.1-P	Field mustard	nucleus	35.79	38.34
Bra004927.1-P	Field mustard	nucleus	33.21	37.19
Bra000392.1-P	Field mustard	nucleus	34.69	36.58
Bra025126.1-P	Field mustard	nucleus	34.69	36.58
Os12t0501700-00	Rice	nucleus	31.0	36.05
Bra014454.1-P	Field mustard	nucleus	30.26	35.65
KXG23502	Sorghum	nucleus	29.15	35.43
Bra026543.1-P	Field mustard	nucleus	35.06	35.32
Bra037895.1-P	Field mustard	nucleus	28.04	33.04
Bra004716.1-P	Field mustard	nucleus	28.78	31.97
Bra000696.1-P	Field mustard	nucleus	26.94	31.6
Zm00001d023736_P001	Maize	nucleus	29.89	31.52
Bra030222.1-P	Field mustard	nucleus	26.2	31.28
Bra013364.1-P	Field mustard	nucleus	28.78	30.95
Bra011797.1-P	Field mustard	nucleus	25.83	30.7
Bra012564.1-P	Field mustard	nucleus	28.41	30.68
Bra010623.1-P	Field mustard	nucleus	23.99	30.37
Bra007419.1-P	Field mustard	nucleus	27.31	30.2
Bra014552.1-P	Field mustard	nucleus	27.31	29.84
Bra039921.1-P	Field mustard	nucleus	24.72	29.52
Bra017376.1-P	Field mustard	nucleus	26.2	29.22
Bra017638.1-P	Field mustard	nucleus	25.09	28.33
Bra003356.1-P	Field mustard	nucleus	25.83	25.64
Bra040719.1-P	Field mustard	nucleus	15.13	24.12
Bra011509.1-P	Field mustard	nucleus	24.72	23.1

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra004007	EnsemblPlants:Bra004007.1	EnsemblPlants:Bra004007.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4CIH3
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF244	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002541982	SEG:seg	:	:

Description

AT1G69120 (E=7e-123) AP1, AGL7 | AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor

Coordinates

chrA07:+:16265323..16271277

Molecular Weight (calculated)

31667.9 Da

IEP (calculated)

8.312

GRAVY (calculated)

-0.898

Length

271 amino acids

Sequence
(BLAST)

001: MQSGGDTWDG PVEIVPLKGI KMGRGRVQLK RIENKINRQV TFSKRRAGLM KKAHEISVLC DAEVALVVFS HKGKLFEYST DSCMEKILER YERYSYAERQ
101: LIAPESDSNY NRLKAKIELL ERNQRHYLGE DLQAMSSKEL QNLEQQLDTA LKHIRSRKNQ LMYDSINELQ RKEKAIQEQN SMLSKQIKER EKVLRAQQEQ
201: WDEQNHGHNM PPPPPPQQHQ IQHPYMLSHQ PSPFLNMGGL YQEEDQMTMR RNDLDLSLEP VYNCNLGCFA A

Best Arabidopsis Sequence Match ( AT1G69120.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA

Arabidopsis Description

AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.