Factsheet for Bra031905.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, nucleus

Predictor Summary:

nucleus 2
extracellular 1
plasma membrane 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra004007.1-P
Bra004361.1-P
Bra006786.1-P
Bra024372.1-P
Bra031905.1-P
Bra038326.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65260.1	Bra004007.1-P	AT1G69120.1	11439126
AT5G65260.1	Bra004361.1-P	AT1G69120.1	11439126
AT5G65260.1	Bra038326.1-P	AT1G69120.1	11439126
AT5G65260.1	Bra002677.1-P	AT5G58040.1	18479511
AT5G65260.1	Bra006786.1-P	AT5G58040.1	18479511
AT5G65260.1	Bra024372.1-P	AT5G65260.1	18479511
AT5G65260.1	Bra031905.1-P	AT5G65260.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	99.02	99.02
VIT_16s0039g02780.t01	Wine grape	nucleus, plasma membrane, plastid	43.14	45.83
Solyc03g094090.2.1	Tomato	nucleus	47.06	45.71
Bra024372.1-P	Field mustard	nucleus	82.35	38.18
AT5G65260.1	Thale cress	nucleus	81.37	37.73
KRH43152	Soybean	nucleus	74.51	34.86
KRH59303	Soybean	nucleus	72.55	34.42
GSMUA_Achr2P22250_001	Banana	nucleus	70.59	33.33
GSMUA_Achr6P10340_001	Banana	nucleus	70.59	33.33
PGSC0003DMT400041675	Potato	nucleus	70.59	33.03
PGSC0003DMT400043273	Potato	nucleus	65.69	31.02
GSMUA_Achr3P21300_001	Banana	nucleus	65.69	31.02
EER88092	Sorghum	nucleus	60.78	30.54
KXG30711	Sorghum	nucleus	61.76	29.72
TraesCS7B01G083600.1	Wheat	nucleus	60.78	29.67
Zm00001d037200_P004	Maize	extracellular, nucleus	58.82	29.56
TraesCS6A01G316300.1	Wheat	nucleus	59.8	29.05
Os02t0757900-02	Rice	nucleus	60.78	28.7
Os06t0219600-01	Rice	nucleus	56.86	28.43
HORVU6Hr1G077700.12	Barley	nucleus	58.82	27.65
GSMUA_AchrUn_...	Banana	nucleus	54.9	26.92
TraesCS7A01G177900.1	Wheat	nucleus	59.8	26.52
TraesCS7D01G179700.1	Wheat	nucleus	59.8	26.52
Bra029187.1-P	Field mustard	nucleus	55.88	25.33
TraesCS6B01G346800.2	Wheat	nucleus	58.82	24.39
Bra035725.1-P	Field mustard	nucleus	53.92	24.23
Bra022536.1-P	Field mustard	nucleus	53.92	23.81
Zm00001d044869_P001	Maize	nucleus	60.78	22.71
Zm00001d052198_P002	Maize	nucleus	58.82	22.56
Zm00001d018112_P004	Maize	nucleus	61.76	22.11
TraesCS6D01G295600.1	Wheat	nucleus	45.1	20.72
Bra001462.1-P	Field mustard	nucleus	24.51	3.98
Bra038740.1-P	Field mustard	nucleus	22.55	3.73
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	2.94	2.91

Protein Annotations

EnsemblPlants:Bra031905.1	EnsemblPlants:Bra031905.1-P	EnsemblPlantsGene:Bra031905	ncoils:Coil	PANTHER:PTHR43987	PANTHER:PTHR43987:SF3
SEG:seg	UniParc:UPI000057C506	UniProt:M4ESX5	MapMan:35.1	:	:

Description

AT5G65260 (E=7e-028) | polyadenylate-binding protein family protein / PABP family protein

Coordinates

chrA02:+:27179877..27180318

Molecular Weight (calculated)

11385.4 Da

IEP (calculated)

3.879

GRAVY (calculated)

-0.574

Length

102 amino acids

Sequence
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMDMMTAAD DDAAKELDEM KKRLKEIEDE AAALREMQAK VEKDMGPQDP ATMAADQAGK EEVDARSVFV GNVRICLCFW
101: LI

Best Arabidopsis Sequence Match ( AT5G65260.1 )
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Arabidopsis Description

PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.