Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88092 | Sorghum | nucleus | 87.25 | 87.68 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 85.78 | 86.21 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 87.75 | 85.65 |
| Os02t0757900-02 | Rice | nucleus | 80.39 | 75.93 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 83.33 | 73.91 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 83.33 | 73.91 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 76.96 | 72.69 |
| KRH59303 | Soybean | nucleus | 75.0 | 71.16 |
| CDY37814 | Canola | nucleus | 53.92 | 70.51 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 74.51 | 70.37 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 74.51 | 70.37 |
| KRH43152 | Soybean | nucleus | 74.02 | 69.27 |
| CDY33970 | Canola | nucleus | 71.08 | 68.72 |
| AT5G10350.1 | Thale cress | nucleus | 72.55 | 68.2 |
| PGSC0003DMT400041675 | Potato | nucleus | 72.55 | 67.89 |
| Solyc11g009090.1.1 | Tomato | nucleus | 72.55 | 67.58 |
| AT5G65260.1 | Thale cress | nucleus | 72.55 | 67.27 |
| CDY08805 | Canola | nucleus, plasma membrane | 72.06 | 66.82 |
| Bra024372.1-P | Field mustard | nucleus | 72.06 | 66.82 |
| CDY55162 | Canola | nucleus | 71.57 | 66.36 |
| PGSC0003DMT400043273 | Potato | nucleus | 68.14 | 64.35 |
| Zm00001d044869_P001 | Maize | nucleus | 83.33 | 62.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.75 | 61.54 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 59.31 | 57.08 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 28.43 | 56.86 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 28.43 | 56.86 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 30.88 | 51.64 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 20.1 | 42.71 |
| Solyc03g094090.2.1 | Tomato | nucleus | 20.1 | 39.05 |
| Os04t0472400-00 | Rice | mitochondrion | 3.92 | 8.42 |
| Os08t0504600-01 | Rice | nucleus | 26.47 | 7.89 |
| Os04t0306800-01 | Rice | nucleus | 25.0 | 7.86 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | EntrezGene:4340509 | EMBL:AK060429 | EMBL:AK099019 | ProteinID:BAD37238.1 |
| ProteinID:BAF19077.1 | ProteinID:BAS96817.1 | ncoils:Coil | ProteinID:EEE65343.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os06g0219600 |
| EnsemblPlants:Os06t0219600-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF5 | UniProt:Q67X81 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00004261FD | RefSeq:XP_015640903.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Poly(A)-binding protein II-like. (Os06t0219600-01)
Coordinates
chr6:+:6155940..6159841
Molecular Weight (calculated)
23180.3 Da
IEP (calculated)
4.932
GRAVY (calculated)
-0.903
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEEHEVYG QEIPLDGEDV DMGAPGDEAA KMQELDEMKR RLKEMEEEAN ALREMQTKVA KEMQGLDPNA SSSESKEEMD ARSVYVGNVD YACTPEEVQQ
101: HFNSCGTVNR VTILTDKFGQ PKGFAYVEFL EVEAVQEAVK LNESELHGRQ IKVAPKRTNV PGMKQPRGGR GFGGHPYMRP YGAPFYNPYG YGYPRFRRPR
201: RPYF
101: HFNSCGTVNR VTILTDKFGQ PKGFAYVEFL EVEAVQEAVK LNESELHGRQ IKVAPKRTNV PGMKQPRGGR GFGGHPYMRP YGAPFYNPYG YGYPRFRRPR
201: RPYF
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.