Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P22250_001 | Banana | nucleus | 88.89 | 88.89 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 87.5 | 87.5 |
| CDY37814 | Canola | nucleus | 58.8 | 81.41 |
| AT5G65260.1 | Thale cress | nucleus | 80.56 | 79.09 |
| CDY33970 | Canola | nucleus | 76.39 | 78.2 |
| Bra024372.1-P | Field mustard | nucleus | 79.63 | 78.18 |
| CDY08805 | Canola | nucleus, plasma membrane | 79.63 | 78.18 |
| KRH59303 | Soybean | nucleus | 77.78 | 78.14 |
| EER88092 | Sorghum | nucleus | 73.15 | 77.83 |
| CDY55162 | Canola | nucleus | 79.17 | 77.73 |
| AT5G10350.1 | Thale cress | nucleus | 77.78 | 77.42 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 72.22 | 76.85 |
| KRH43152 | Soybean | nucleus | 76.85 | 76.15 |
| KXG30711 | Sorghum | nucleus | 74.54 | 75.94 |
| PGSC0003DMT400043273 | Potato | nucleus | 75.93 | 75.93 |
| PGSC0003DMT400041675 | Potato | nucleus | 76.39 | 75.69 |
| Solyc11g009090.1.1 | Tomato | nucleus | 76.39 | 75.34 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 73.15 | 75.24 |
| Os02t0757900-02 | Rice | nucleus | 75.0 | 75.0 |
| Os06t0219600-01 | Rice | nucleus | 70.37 | 74.51 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 71.3 | 73.68 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 73.15 | 72.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 68.98 | 71.63 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 31.02 | 65.69 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 31.02 | 65.69 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 74.07 | 65.04 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 36.11 | 63.93 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 65.28 | 63.51 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 67.59 | 63.48 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 67.59 | 63.48 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 62.04 | 63.21 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 29.63 | 62.14 |
| Zm00001d052198_P002 | Maize | nucleus | 74.07 | 60.15 |
| Zm00001d018112_P004 | Maize | nucleus | 75.0 | 56.84 |
| Zm00001d044869_P001 | Maize | nucleus | 70.37 | 55.68 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 21.76 | 48.96 |
| Solyc03g094090.2.1 | Tomato | nucleus | 23.61 | 48.57 |
| GSMUA_Achr4P09640_001 | Banana | plastid | 15.28 | 11.3 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 26.39 | 8.02 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:GSMUA_Achr3G21300_001 | EnsemblPlants:GSMUA_Achr3P21300_001 | EnsemblPlants:GSMUA_Achr3T21300_001 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M0SGJ6 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000296AF02 | SEG:seg |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G21300_001]
Coordinates
chr3:+:22255920..22262850
Molecular Weight (calculated)
24586.9 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.756
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEEHEVYG GEIPDEADMD ADVDMALPNE NAAKLQELDE MKRRLKEMED EAAALREIQA KVEKEMGAVQ ESSSAAATQA SKEEVDARSV FVGNVDYACT
101: PEEVQQHFQS CGTVNRVTIL TDKFGQPKGF AYVEFVEVEA VQEALQLNES ELHGRQIKVA AKRTNVPGMK QFRPRRFNSY AGSPYRRPFM PPYFASPYGY
201: GKSPRFRRPM RYRPYL
101: PEEVQQHFQS CGTVNRVTIL TDKFGQPKGF AYVEFVEVEA VQEALQLNES ELHGRQIKVA AKRTNVPGMK QFRPRRFNSY AGSPYRRPFM PPYFASPYGY
201: GKSPRFRRPM RYRPYL
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.