Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P17820_001 | Banana | cytosol, golgi, nucleus | 48.84 | 62.79 |
| Solyc09g065080.1.1 | Tomato | cytosol, nucleus, plastid | 35.92 | 61.78 |
| KXG27890 | Sorghum | cytosol | 53.23 | 42.04 |
| Os11t0176100-01 | Rice | nucleus | 53.75 | 42.02 |
| Zm00001d004779_P001 | Maize | nucleus | 52.45 | 41.34 |
| TraesCS4B01G094500.1 | Wheat | nucleus | 51.42 | 40.61 |
| TraesCS4D01G091300.1 | Wheat | nucleus | 51.16 | 40.41 |
| HORVU4Hr1G019040.4 | Barley | cytosol, mitochondrion, nucleus, plastid | 51.42 | 37.41 |
| Bra007985.1-P | Field mustard | nucleus | 42.38 | 36.36 |
| CDY03684 | Canola | nucleus | 42.38 | 36.36 |
| AT1G71800.1 | Thale cress | nucleus | 42.12 | 35.36 |
| CDX68301 | Canola | cytosol, nucleus, plastid | 41.34 | 34.78 |
| VIT_18s0001g01800.t01 | Wine grape | nucleus | 48.84 | 34.68 |
| Solyc02g069160.2.1 | Tomato | nucleus | 45.48 | 34.58 |
| CDY36682 | Canola | cytosol, nucleus, plastid | 41.09 | 34.57 |
| Zm00001d053041_P002 | Maize | cytosol | 51.68 | 34.31 |
| PGSC0003DMT400026767 | Potato | nucleus | 44.7 | 33.99 |
| KRH35025 | Soybean | nucleus | 47.03 | 33.39 |
| KRG91748 | Soybean | nucleus | 47.55 | 33.33 |
| Bra003913.1-P | Field mustard | plastid | 41.34 | 32.85 |
| CDY37934 | Canola | nucleus | 42.12 | 29.0 |
| Zm00001d007684_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 13.95 | 25.0 |
| PGSC0003DMT400033572 | Potato | plastid | 21.19 | 20.2 |
Protein Annotations
| MapMan:16.2.1.3.2 | Gene3D:3.30.70.330 | InterPro:CSTF2_hinge | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSMUA_Achr10G09750_001 | EnsemblPlants:GSMUA_Achr10P09750_001 | EnsemblPlants:GSMUA_Achr10T09750_001 | InterPro:IPR000504 |
| InterPro:IPR012677 | UniProt:M0RGV1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF14327 | PFscan:PS50102 |
| PANTHER:PTHR23139 | PANTHER:PTHR23139:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000295C56D | SEG:seg | : | : | : | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G09750_001]
Coordinates
chr10:+:19426374..19430662
Molecular Weight (calculated)
41495.6 Da
IEP (calculated)
8.895
GRAVY (calculated)
-0.346
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASGGSQHR CVFVGNIPYD ATEEQLIQIC EEVGPVVSFR LVFDRETGKP KGYGFCEYKD EETALSARRN LQGYEINGRQ LRVDFAENDK NADRNREQGR
101: GGPGLASNAF SNMADVQKQF SGAPILGDST LHQPLGLPLA ATAASVMAGV LGGAQTSNAQ NVLQSQPGVG NDPLTHYLSR LSKHQMHEIM SEMKALTAKN
201: KALAHQLLQA SPQLSKALFQ AQIMLRMVTP QMMQMAGSGQ SSISTSQISS HLGQASSQTL GGKLSKPPET LVPITSQSPV ILKQASLPIQ QVHVQPQYQL
301: PPLPQGQVLQ GTLPSSWPQS IDGVPLQPSP LSSSICPISQ SQTPLSQQPV PTVASLTHHP QLAHPNTALQ QANLSRPSIS QARLFNK
101: GGPGLASNAF SNMADVQKQF SGAPILGDST LHQPLGLPLA ATAASVMAGV LGGAQTSNAQ NVLQSQPGVG NDPLTHYLSR LSKHQMHEIM SEMKALTAKN
201: KALAHQLLQA SPQLSKALFQ AQIMLRMVTP QMMQMAGSGQ SSISTSQISS HLGQASSQTL GGKLSKPPET LVPITSQSPV ILKQASLPIQ QVHVQPQYQL
301: PPLPQGQVLQ GTLPSSWPQS IDGVPLQPSP LSSSICPISQ SQTPLSQQPV PTVASLTHHP QLAHPNTALQ QANLSRPSIS QARLFNK
001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
Arabidopsis Description
CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.