Factsheet for Bra007985.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra006786.1-P
Bra012994.1-P
Bra016588.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	Bra016588.1-P	AT1G17760.1	12379796
AT1G71800.1	Bra016588.1-P	AT1G17760.1	18479511
AT1G71800.1	Bra002677.1-P	AT5G58040.1	18479511
AT1G71800.1	Bra006786.1-P	AT5G58040.1	18479511
AT1G71800.1	Bra012994.1-P	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03684	Canola	nucleus	100.0	100.0
AT1G71800.1	Thale cress	nucleus	73.39	71.8
Bra003913.1-P	Field mustard	plastid	73.61	68.17
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	28.6	57.33
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	32.82	49.17
GSMUA_Achr10P...	Banana	nucleus	36.36	42.38
Solyc02g069160.2.1	Tomato	nucleus	43.9	38.9
KRG91748	Soybean	nucleus	47.45	38.77
KRH35025	Soybean	nucleus	46.56	38.53
VIT_18s0001g01800.t01	Wine grape	nucleus	46.12	38.17
PGSC0003DMT400026767	Potato	nucleus	43.02	38.11
KXG27890	Sorghum	cytosol	40.8	37.55
TraesCS4D01G091300.1	Wheat	nucleus	40.8	37.55
Zm00001d004779_P001	Maize	nucleus	40.8	37.47
TraesCS4B01G094500.1	Wheat	nucleus	40.58	37.35
Os11t0176100-01	Rice	nucleus	39.91	36.36
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	41.46	35.15
Zm00001d053041_P002	Maize	cytosol	40.13	31.05
PGSC0003DMT400033572	Potato	plastid	25.28	28.08
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.2	25.46

Protein Annotations

MapMan:16.2.1.3.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra007985	EnsemblPlants:Bra007985.1	EnsemblPlants:Bra007985.1-P	InterPro:CSTF2_hinge
InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031124	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4CUU0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304	PFAM:PF14327	PFscan:PS50102
PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002546E0A	SEG:seg	:	:	:	:

Description

AT1G71800 (E=4e-182) | cleavage stimulation factor, putative

Coordinates

chrA02:+:12281930..12284416

Molecular Weight (calculated)

49123.8 Da

IEP (calculated)

9.764

GRAVY (calculated)

-0.551

Length

451 amino acids

Sequence
(BLAST)

001: MASSSSSSQR RCVFVGNIPY DATEEQLREI CGEVGPVVSF RLVTDRETGK PKGYGFCEYK DEETALSARR NLKSYEINGR QLRVDFAEND KGTDKPRDQG
101: QGGTGLPPAV AATESQKQVG GAVDSSMHQP VGIHLAMQAA SVMAGALGGP QVGSQSTLQV PASDPLTLHL AKMSRTQLSE IISSIKLMAT QNKEEARQLL
201: VSRPHLLKAV FLAQIMLGIV SPQVLQTPNI VQAPNHMTGS SIHDTHLSGS SQSLLPPLAQ RPQQLNRPPH SQFPVQQSSK QPLSQIPQPG VNPPPRSQVK
301: GLSETAAPFQ RQKQVLPASN AIQPSQVPRP PLTSSVMQQG GQMASLNYGK RINNEGPHES IDRPSKMMRV DDRRTTPFHT GHASNTMLPN PLQLQEKAPQ
401: ALLSPDVQST LLQQVMNLTP DQLRMLTPEQ QQEVLKLQQA LKQQDHVMQP S

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.