CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94131
KRH12930
KRH37905
KRH43152
KRH54731
KRH59303
KRH63183

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	KRG94131	AT1G17760.1	12379796
AT1G71800.1	KRG94131	AT1G17760.1	18479511
AT1G71800.1	KRH43152	AT5G10350.1	18479511
AT1G71800.1	KRH59303	AT5G10350.1	18479511
AT1G71800.1	KRH12930	AT5G58040.1	18479511
AT1G71800.1	KRH37905	AT5G58040.1	18479511
AT1G71800.1	KRH54731	AT5G60940.1	18479511
AT1G71800.1	KRH63183	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91748	Soybean	nucleus	94.5	93.3
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	26.61	64.44
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	29.36	53.16
VIT_18s0001g01800.t01	Wine grape	nucleus	49.54	49.54
CDX68301	Canola	cytosol, nucleus, plastid	41.28	48.91
AT1G71800.1	Thale cress	nucleus	40.92	48.37
CDY36682	Canola	cytosol, nucleus, plastid	40.55	48.04
PGSC0003DMT400026767	Potato	nucleus	44.77	47.94
Solyc02g069160.2.1	Tomato	nucleus	44.77	47.94
Zm00001d004779_P001	Maize	nucleus	42.94	47.66
KXG27890	Sorghum	cytosol	42.57	47.35
GSMUA_Achr10P...	Banana	nucleus	33.39	47.03
CDY03684	Canola	nucleus	38.53	46.56
Bra007985.1-P	Field mustard	nucleus	38.53	46.56
TraesCS4B01G094500.1	Wheat	nucleus	41.28	45.92
Os11t0176100-01	Rice	nucleus	41.65	45.86
Bra003913.1-P	Field mustard	plastid	40.73	45.59
TraesCS4D01G091300.1	Wheat	nucleus	40.73	45.31
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	42.57	43.61
Zm00001d053041_P002	Maize	cytosol	42.02	39.28
CDY37934	Canola	nucleus	38.53	37.37
PGSC0003DMT400033572	Potato	plastid	27.16	36.45
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.91	25.0

Protein Annotations

Gene3D:1.10.20.70	EntrezGene:100794399	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	EMBL:ACUP02006648	InterPro:CSTF2_C_sf
InterPro:CSTF2_hinge	InterPro:CSTF_C	EnsemblPlantsGene:GLYMA_10G219500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005847	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0031124	GO:GO:0098789	UniProt:I1LDA7	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR038192
EnsemblPlants:KRH35025	ProteinID:KRH35025	ProteinID:KRH35025.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304
PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233C354	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:45115436..45122237

Molecular Weight (calculated)

59076.6 Da

IEP (calculated)

7.804

GRAVY (calculated)

-0.456

Length

545 amino acids

Sequence
(BLAST)

001: MATSQSQHRC VFVGNIPYDA TEEQLIEICQ EVGPVVSFRL VIDRETGKPK GYGFCEYKDE ETALSARRNL QGYEINGRQL RVDFAENDKG NDRNREQGRG
101: GPGMTTNVDH QKQVGIPAVL GEAVQHQPIG LHIAITAAAV MTAALGGAQF GIQSNQNSLQ SQSALAHDPL TLHLAKMSRS QLTEIISELK GMATQNKELA
201: RQLLLSRPQL PKALFQAQIM LGMVTSQVLQ MPNLRLVSDQ TSQSLMNEGQ LGQPSLVQTL SGLPPPGQGK LQPGLTPYAQ EGQVNTIPHN PLAPNQLTAH
301: PKPPVQPRIP LQQHPNNLVL PGTLSGQSNL MLPSARPPGL GSLSVRPLIQ PGTSTALNQQ MHPSLLQHSV HVGNSTVGHN IQMHCPSMSS ANSQLLSKGD
401: KSSKVIEDLN WAKRANTHSK SNIPLGVEKT NMVHDSSESF TRPSKVMKLD EGRSAPLSSG ISDMPFTDGS SHILGRSSLP VHAAPKAEGQ YSEQQFSQLP
501: PDVESVLLQQ VLNLTPEQLS SLPPDQQQQV IQLQQALRRD QIQPS

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.