Factsheet for PGSC0003DMT400033572

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008250
PGSC0003DMT400041675
PGSC0003DMT400043273
PGSC0003DMT400059810

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	PGSC0003DMT400041675	AT5G10350.1	18479511
AT1G71800.1	PGSC0003DMT400043273	AT5G10350.1	18479511
AT1G71800.1	PGSC0003DMT400008250	AT5G58040.1	18479511
AT1G71800.1	PGSC0003DMT400059810	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026767	Potato	nucleus	67.98	54.22
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	20.69	37.33
KRH35025	Soybean	nucleus	36.45	27.16
KXG27890	Sorghum	cytosol	32.51	26.94
KRG91748	Soybean	nucleus	35.71	26.27
TraesCS4B01G094500.1	Wheat	nucleus	31.03	25.71
Os11t0176100-01	Rice	nucleus	31.28	25.66
Zm00001d004779_P001	Maize	nucleus	30.79	25.46
TraesCS4D01G091300.1	Wheat	nucleus	30.54	25.31
CDY03684	Canola	nucleus	28.08	25.28
Bra007985.1-P	Field mustard	nucleus	28.08	25.28
CDY36682	Canola	cytosol, nucleus, plastid	28.33	25.0
VIT_18s0001g01800.t01	Wine grape	nucleus	33.5	24.95
AT1G71800.1	Thale cress	nucleus	28.33	24.95
CDX68301	Canola	cytosol, nucleus, plastid	27.83	24.57
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	31.77	24.25
Bra003913.1-P	Field mustard	plastid	27.83	23.2
Zm00001d053041_P002	Maize	cytosol	31.77	22.13
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	15.76	21.26
GSMUA_Achr10P...	Banana	nucleus	20.2	21.19
CDY37934	Canola	nucleus	28.08	20.28
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	1.72	3.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400033572	EnsemblPlantsGene:PGSC0003DMG400012892	Gene3D:1.10.20.70	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0031124	InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge	InterPro:CSTF_C	InterPro:IPR038192
PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	PFAM:PF14304	PFAM:PF14327	PGSC:PGSC0003DMG400012892	SEG:seg
UniParc:UPI000296D4F5	UniProt:M1AZC3	MapMan:16.2.1.3.2	:	:	:

Description

MRNA splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400012892]

Coordinates

chr9:+:47407514..47413749

Molecular Weight (calculated)

43305.7 Da

IEP (calculated)

9.128

GRAVY (calculated)

-0.355

Length

406 amino acids

Sequence
(BLAST)

001: MVANADPKKH IGGPAVPVDS ALQQPLGMQV AMTAAAVMAG ALGASQSGSS FNPSGVDPLT LHMSKLSRSQ LNDVMSEFKA MCTQNKEQTR QLLLAIPNLS
101: KALFQAQLIL GMVTQSMLQT PNIRQSVVPQ LQPLFLDSQR SQQLATQSLP GLPPLPPSLL PQARPQIQPA QPGQNQVLQS LLPTPSRILP SIQPQVSVSN
201: NPPVQVGTSS AIKQQMQPSF LQQAGPVAST NFTYNNQLGT ANTSYHPSPS MCPPLLEQSF QGNPSAVSGV LDNTNKDSRR PQVHNNSSLI TRPAYPSGLP
301: EEKRAAANNL DLLSRPSKMT RLNDGISYAL PDASVSTPQS GPSTQVSAAA ETSNPDKQAS QVQLPSDVES ALLQQVLSLT PEQLSSLPPD QQQQVIQLQQ
401: MLRQPT

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.