Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041675 | Potato | nucleus | 85.19 | 84.4 |
| KRH59303 | Soybean | nucleus | 83.33 | 83.72 |
| KRH43152 | Soybean | nucleus | 81.94 | 81.19 |
| CDY37814 | Canola | nucleus | 57.87 | 80.13 |
| CDY08805 | Canola | nucleus, plasma membrane | 80.56 | 79.09 |
| AT5G65260.1 | Thale cress | nucleus | 80.09 | 78.64 |
| Bra024372.1-P | Field mustard | nucleus | 80.09 | 78.64 |
| CDY55162 | Canola | nucleus | 80.09 | 78.64 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 78.24 | 78.24 |
| CDY33970 | Canola | nucleus | 76.39 | 78.2 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 77.31 | 77.31 |
| AT5G10350.1 | Thale cress | nucleus | 76.85 | 76.5 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 75.93 | 75.93 |
| PGSC0003DMT400080650 | Potato | nucleus | 67.13 | 73.98 |
| EER88092 | Sorghum | nucleus | 68.06 | 72.41 |
| PGSC0003DMT400021468 | Potato | cytosol, nucleus | 35.19 | 71.7 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 67.13 | 71.43 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 68.06 | 70.33 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 68.06 | 70.0 |
| KXG30711 | Sorghum | nucleus | 67.59 | 68.87 |
| Os06t0219600-01 | Rice | nucleus | 64.35 | 68.14 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 68.06 | 67.74 |
| Os02t0757900-02 | Rice | nucleus | 66.67 | 66.67 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 31.02 | 65.69 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 31.02 | 65.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.04 | 64.42 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 36.11 | 63.93 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 60.65 | 61.79 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 62.04 | 60.36 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 68.52 | 60.16 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 63.89 | 60.0 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 63.89 | 60.0 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 27.78 | 58.25 |
| Zm00001d052198_P002 | Maize | nucleus | 67.13 | 54.51 |
| Zm00001d044869_P001 | Maize | nucleus | 67.13 | 53.11 |
| Zm00001d018112_P004 | Maize | nucleus | 67.59 | 51.23 |
Protein Annotations
| EntrezGene:102595428 | MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1BED0 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400016798 | PGSC:PGSC0003DMG400016798 | EnsemblPlants:PGSC0003DMT400043273 | PFscan:PS50102 | PANTHER:PTHR43987 |
| PANTHER:PTHR43987:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295A360 |
| RefSeq:XP_006366227.1 | SEG:seg | : | : | : | : |
Description
Poly-A binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016798]
Coordinates
chr5:+:46448860..46456539
Molecular Weight (calculated)
24924.2 Da
IEP (calculated)
4.704
GRAVY (calculated)
-0.897
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEEHEVYG GEIPMEAEME ADMDNHPAAD EDAVKELDEM KKRLKEMEDE AAALREMQAK VEKEMGSVQD PANADASQAN REELDSRSIF VGNVDYACTP
101: EEVQQHFQAC GTVNRVTILT DKFGQPKGFA YVEFVEQEAI QEALQLNESE LHGRQLKVMP KRTNVPGMKQ FHPRRFSPYQ PYGFRRPYAP APYFYSPYGY
201: GKAPRFRRAS RYMPYY
101: EEVQQHFQAC GTVNRVTILT DKFGQPKGFA YVEFVEQEAI QEALQLNESE LHGRQLKVMP KRTNVPGMKQ FHPRRFSPYQ PYGFRRPYAP APYFYSPYGY
201: GKAPRFRRAS RYMPYY
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.