CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88655
CDX95960
CDY04265
CDY07357
CDY08805
CDY11833
CDY31306
CDY33554
CDY33952
CDY33970
CDY37814
CDY43886
CDY55162
CDY65811
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65260.1	CDX95960	AT1G69120.1	11439126
AT5G65260.1	CDY04265	AT1G69120.1	11439126
AT5G65260.1	CDY07357	AT1G69120.1	11439126
AT5G65260.1	CDY33554	AT1G69120.1	11439126
AT5G65260.1	CDY65811	AT1G69120.1	11439126
AT5G65260.1	CDX88655	AT5G58040.1	18479511
AT5G65260.1	CDY11833	AT5G58040.1	18479511
AT5G65260.1	CDY43886	AT5G58040.1	18479511
AT5G65260.1	CDY70580	AT5G58040.1	18479511
AT5G65260.1	CDY08805	AT5G65260.1	18479511
AT5G65260.1	CDY31306	AT5G65260.1	18479511
AT5G65260.1	CDY33952	AT5G65260.1	18479511
AT5G65260.1	CDY33970	AT5G65260.1	18479511
AT5G65260.1	CDY37814	AT5G65260.1	18479511
AT5G65260.1	CDY55162	AT5G65260.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08805	Canola	nucleus, plasma membrane	99.55	99.55
Bra024372.1-P	Field mustard	nucleus	99.09	99.09
CDY37814	Canola	nucleus	67.27	94.87
AT5G65260.1	Thale cress	nucleus	94.55	94.55
CDY33970	Canola	nucleus	89.09	92.89
KRH59303	Soybean	nucleus	80.91	82.79
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	38.18	82.35
KRH43152	Soybean	nucleus	80.45	81.19
PGSC0003DMT400043273	Potato	nucleus	78.64	80.09
PGSC0003DMT400041675	Potato	nucleus	79.09	79.82
GSMUA_Achr2P22250_001	Banana	nucleus	78.18	79.63
GSMUA_Achr6P10340_001	Banana	nucleus	77.73	79.17
GSMUA_Achr3P21300_001	Banana	nucleus	77.73	79.17
EER88092	Sorghum	nucleus	70.91	76.85
Zm00001d037200_P004	Maize	extracellular, nucleus	70.0	75.86
TraesCS7B01G083600.1	Wheat	nucleus	70.0	73.68
KXG30711	Sorghum	nucleus	69.55	72.17
Os06t0219600-01	Rice	nucleus	66.36	71.57
TraesCS6A01G316300.1	Wheat	nucleus	68.18	71.43
Os02t0757900-02	Rice	nucleus	68.64	69.91
CDY33952	Canola	cytosol, golgi, nucleus	67.27	69.81
GSMUA_AchrUn_...	Banana	nucleus	64.55	68.27
HORVU6Hr1G077700.12	Barley	nucleus	67.27	68.2
CDY38851	Canola	nucleus	67.73	66.22
CDY32641	Canola	nucleus	67.73	66.22
CDY05837	Canola	nucleus	66.82	64.76
CDX71690	Canola	nucleus	66.36	64.32
TraesCS7A01G177900.1	Wheat	nucleus	65.91	63.04
TraesCS7D01G179700.1	Wheat	nucleus	65.91	63.04
CDX91567	Canola	nucleus	65.0	62.72
CDY16338	Canola	nucleus	65.0	61.9
TraesCS6D01G295600.1	Wheat	nucleus	61.82	61.26
TraesCS6B01G346800.2	Wheat	nucleus	67.27	60.16
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	26.82	57.28
Zm00001d052198_P002	Maize	nucleus	68.64	56.77
Zm00001d044869_P001	Maize	nucleus	69.09	55.68
Zm00001d018112_P004	Maize	nucleus	69.55	53.68
CDX73810	Canola	nucleus	26.82	9.7
CDY00789	Canola	nucleus	25.91	9.5
CDY52667	Canola	nucleus	25.0	9.17
CDY50537	Canola	nucleus	25.0	9.05

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	GO:A0A078IXX8	UniProt:A0A078IXX8	EnsemblPlants:CDY55162	ProteinID:CDY55162
ProteinID:CDY55162.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00016456001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43987	PANTHER:PTHR43987:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EE8A9F	SEG:seg	:	:	:	:

Description

BnaCnng28280DBnaCnng28280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXX8]

Coordinates

chrLK033379:-:12007..14513

Molecular Weight (calculated)

25212.9 Da

IEP (calculated)

4.792

GRAVY (calculated)

-0.826

Length

220 amino acids

Sequence
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMEAPNPDM EMAAADEDAA KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPATLA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQSCGTVHR VTILTDKFGQ PKGFAYVEFV EVDAIQEALQ LNESELHGRQ LKVLPKRTNV PGLKQHRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Best Arabidopsis Sequence Match ( AT5G65260.1 )
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Arabidopsis Description

PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.