CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035725.1-P	Field mustard	nucleus	100.0	100.0
CDX71690	Canola	nucleus	96.92	96.92
CDY38851	Canola	nucleus	91.19	92.0
CDY32641	Canola	nucleus	91.19	92.0
CDX91567	Canola	nucleus	89.43	89.04
CDY16338	Canola	nucleus	89.43	87.88
AT5G51120.2	Thale cress	nucleus	88.99	76.23
CDY37814	Canola	nucleus	50.22	73.08
KRH34559	Soybean	nucleus	68.28	72.43
KRG92240	Soybean	nucleus	67.84	71.96
PGSC0003DMT400021468	Potato	cytosol, nucleus	33.48	71.7
Solyc03g094080.2.1	Tomato	nucleus	49.34	70.44
CDY33970	Canola	nucleus	63.0	67.77
CDY55162	Canola	nucleus	64.76	66.82
CDY08805	Canola	nucleus, plasma membrane	64.32	66.36
Solyc03g094040.2.1	Tomato	mitochondrion	42.29	62.75
CDY33952	Canola	cytosol, golgi, nucleus	50.66	54.25
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	24.23	53.92
TraesCS1D01G218400.1	Wheat	nucleus	45.37	50.24
TraesCS1A01G216200.1	Wheat	nucleus	45.37	50.0
KXG38899	Sorghum	nucleus	42.29	50.0
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	42.73	41.81
Solyc03g094060.2.1	Tomato	cytosol	41.85	32.2
CDX73810	Canola	nucleus	26.87	10.03
CDY00789	Canola	nucleus	25.99	9.83
CDY52667	Canola	nucleus	25.55	9.67
CDY50537	Canola	nucleus	25.55	9.54

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	GO:A0A078EXW9	EnsemblPlants:CDY05837	ProteinID:CDY05837	ProteinID:CDY05837.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00120969001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987
PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002543E2B
SEG:seg	:	:	:	:	:

Description

BnaA10g05830D

Coordinates

chrLK031965:+:619997..621854

Molecular Weight (calculated)

25744.0 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.891

Length

227 amino acids

Sequence
(BLAST)

001: MTLSDEQEHE VYGGDIPEEE EGEMETDEYE EYVGEEGAAA GGDEELEPGS ASRDLEDMKK RIKEIEEEAG ALREMQAKAE KDMGAGQDPS NAISSAEKEE
101: VDSRSIYVGN VDYACTPEEV QQHFQSCGTV NRVTILTDKF GQPKGFAYVE FVEADAVQNS LILNESELHG RQIKVSAKRT NVPGMRQFRG RRPFRPMRGF
201: MAAPMYYPPY AYGRVPRFRR PMRYRPY

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.