CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92240	Soybean	nucleus	99.07	99.07
PGSC0003DMT400021468	Potato	cytosol, nucleus	38.32	77.36
Solyc03g094080.2.1	Tomato	nucleus	56.54	76.1
Bra029187.1-P	Field mustard	nucleus	73.36	69.78
CDY38851	Canola	nucleus	73.36	69.78
CDY32641	Canola	nucleus	73.36	69.78
KRH59303	Soybean	nucleus	68.69	68.37
CDY05837	Canola	nucleus	72.43	68.28
Bra035725.1-P	Field mustard	nucleus	72.43	68.28
Solyc03g094040.2.1	Tomato	mitochondrion	48.6	67.97
CDX91567	Canola	nucleus	71.96	67.54
KRH10563	Soybean	nucleus	62.15	67.51
CDY16338	Canola	nucleus	71.96	66.67
Bra022536.1-P	Field mustard	nucleus	71.96	66.67
CDX71690	Canola	nucleus	70.56	66.52
KRH43152	Soybean	nucleus	67.76	66.51
KRH43887	Soybean	nucleus	61.22	66.5
AT5G51120.2	Thale cress	nucleus	72.9	58.87
KXG38899	Sorghum	nucleus	46.73	52.08
TraesCS1D01G218400.1	Wheat	nucleus	45.79	47.8
TraesCS1A01G216200.1	Wheat	nucleus	45.33	47.09
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	44.39	40.95
Solyc03g094060.2.1	Tomato	cytosol	46.73	33.9
KRH66489	Soybean	mitochondrion	19.16	26.8
KRH43491	Soybean	nucleus	29.91	9.4
KRH13922	Soybean	nucleus	28.97	9.2

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	EMBL:ACUP02006610	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G191400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LCG0	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH34559	ProteinID:KRH34559	ProteinID:KRH34559.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43987	PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00023CE674	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:42404774..42409912

Molecular Weight (calculated)

24534.7 Da

IEP (calculated)

4.860

GRAVY (calculated)

-0.897

Length

214 amino acids

Sequence
(BLAST)

001: MEQEEHEVYG ADIPDEEIDM DADAEQQDEQ LAPNHTNKEL EDMKKRLKEI EEEASALREM QAKVEKEMGA VQDSSGTSAT QAEKEEVDAR SIYVGNVDYA
101: CTPEEVQQHF QSCGTVNRVT ILTDKFGQPK GFAYVEFVEI DAVQNALLLN ESELHGRQLK VSAKRTNVPG MKQYFGRRPA GFRSRRPFMS APFFPPYGYG
201: RVPRYRRPTR YRPY

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.