CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g02150.t01	Wine grape	cytosol	35.29	61.36
KRH10563	Soybean	nucleus	26.8	20.81
KRH43887	Soybean	nucleus	25.49	19.8
KRG92240	Soybean	nucleus	26.8	19.16
KRH34559	Soybean	nucleus	26.8	19.16
KRH59303	Soybean	nucleus	26.14	18.6
KRH43491	Soybean	nucleus	80.39	18.06
KRH43152	Soybean	nucleus	25.49	17.89
KRH13922	Soybean	nucleus	67.32	15.28
Solyc01g086980.2.1	Tomato	nucleus	57.52	13.11
CDY52667	Canola	nucleus	49.67	12.67
CDX73810	Canola	nucleus	49.02	12.34
GSMUA_Achr9P16060_001	Banana	golgi	56.86	12.24
CDY50537	Canola	nucleus	48.37	12.17
CDY00789	Canola	nucleus	47.71	12.17
Bra001462.1-P	Field mustard	nucleus	49.02	11.94
Bra038740.1-P	Field mustard	nucleus	47.71	11.85
AT3G12640.3	Thale cress	nucleus	50.98	11.78
TraesCS2A01G330100.3	Wheat	nucleus	47.71	10.63
Os08t0504600-01	Rice	nucleus	47.06	10.53
HORVU7Hr1G050300.3	Barley	nucleus	47.71	10.52
TraesCS2B01G352200.2	Wheat	nucleus	47.06	10.51
TraesCS7D01G243800.1	Wheat	nucleus	47.71	10.49
TraesCS7B01G146300.1	Wheat	nucleus	47.71	10.49
TraesCS7A01G245200.1	Wheat	nucleus	47.71	10.49
HORVU2Hr1G081930.1	Barley	nucleus	47.06	10.4
TraesCS2D01G332600.2	Wheat	nucleus	47.06	10.4
EES15409	Sorghum	nucleus	46.41	10.23
Zm00001d052888_P004	Maize	nucleus	46.41	10.22
Zm00001d025673_P005	Maize	nucleus	46.41	10.06
KXG26527	Sorghum	nucleus	46.41	9.99
Zm00001d031422_P006	Maize	nucleus	45.1	9.94
Zm00001d003329_P003	Maize	nucleus	45.75	8.58
Os04t0472400-00	Rice	mitochondrion	3.27	5.26

Protein Annotations

EMBL:ACUP02001973	EnsemblPlants:KRH66489	EnsemblPlantsGene:GLYMA_03G109800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45275	PFAM:PF00076	PFscan:PS50102	ProteinID:KRH66489	ProteinID:KRH66489.1
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0006EDB1F1	UniProt:A0A0R0KMR7	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr3:-:31218040..31219550

Molecular Weight (calculated)

17214.7 Da

IEP (calculated)

10.138

GRAVY (calculated)

0.004

Length

153 amino acids

Sequence
(BLAST)

001: MRQITWLATL LNFKNLHLRL NNLTQLQANP ALDVQKEFSK AHLTASGSNA AGRPSEDVDS RTIFVSNVHF AATKDGLSRH FNRFGEVLKV IIVTDAAIGQ
101: PKGAAYVEFM RKEAADNALS LDNTSFMSRI LKVFITFWFS QVIYMFSPSQ LYI

Best Arabidopsis Sequence Match ( AT3G12640.1 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.