CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10563	Soybean	nucleus	95.94	95.94
PGSC0003DMT400080650	Potato	nucleus	79.7	80.1
Solyc10g047360.1.1	Tomato	nucleus	78.17	78.57
KRH59303	Soybean	nucleus	78.68	72.09
KRH43152	Soybean	nucleus	78.17	70.64
VIT_03s0017g01220.t01	Wine grape	nucleus	61.42	67.22
KRH34559	Soybean	nucleus	66.5	61.22
KRG92240	Soybean	nucleus	65.99	60.75
KRH66489	Soybean	mitochondrion	19.8	25.49
KRH43491	Soybean	nucleus	29.44	8.52
KRH13922	Soybean	nucleus	28.93	8.46

Protein Annotations

EntrezGene:100784473	MapMan:16.2.1.1.2	Gene3D:3.30.70.330	EMBL:ACUP02004902	EMBL:BT093981	UniProt:C6T922
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G177900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH43887	ProteinID:KRH43887	ProteinID:KRH43887.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001B1644F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:14244761..14249564

Molecular Weight (calculated)

22487.5 Da

IEP (calculated)

6.143

GRAVY (calculated)

-0.832

Length

197 amino acids

Sequence
(BLAST)

001: MENDDVDMHA ADTNEELDDM KKRLKEMEDE AAALREMQAK VEKEMGSVQD PANASASQAN KEEIDSRSVF VGNVDYSCTP EEVQQHFQSC GTVNRITIRT
101: DKFGQPKGYA YVEFLEVEAV QEALLLNESE LHGRQLKVTA KRTNIPGMKQ YRPRRSTNPY MGGLRGRTPY AAPFIYSPYG YGKVPRFRMA MRHSPYY

Best Arabidopsis Sequence Match ( AT5G65260.1 )
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Arabidopsis Description

PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.