CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43887	Soybean	nucleus	95.94	95.94
PGSC0003DMT400080650	Potato	nucleus	81.22	81.63
Solyc10g047360.1.1	Tomato	nucleus	79.7	80.1
KRH59303	Soybean	nucleus	79.7	73.02
KRH43152	Soybean	nucleus	78.68	71.1
VIT_03s0017g01220.t01	Wine grape	nucleus	62.94	68.89
KRG92240	Soybean	nucleus	67.51	62.15
KRH34559	Soybean	nucleus	67.51	62.15
KRH66489	Soybean	mitochondrion	20.81	26.8
KRH43491	Soybean	nucleus	29.95	8.66
KRH13922	Soybean	nucleus	29.44	8.61

Protein Annotations

EntrezGene:100791351	MapMan:16.2.1.1.2	Gene3D:3.30.70.330	EMBL:ACUP02009148	EMBL:BT099118	UniProt:C6TN06
ncoils:Coil	EnsemblPlantsGene:GLYMA_15G054800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH10563	ProteinID:KRH10563	ProteinID:KRH10563.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001B1730D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:4302422..4307202

Molecular Weight (calculated)

22530.6 Da

IEP (calculated)

5.804

GRAVY (calculated)

-0.818

Length

197 amino acids

Sequence
(BLAST)

001: MENDDVDMHA ADTSEELDDM KKRLKEMEDE AAALREMQAK VEKEMGSAQD PANASASQAN KEEIDSRSVF VGNVDYSCTP EEVQQHFQSC GTVNRVTIRT
101: DKFGQPKGYA YVEFLEVEAV QEALLLNESE LHGRQLKVTA KRTNIPGMKQ YRPRRTINPY MGGFRGRTPY APPFIYSPYG YGKVPRFRMA MRYSPYY

Best Arabidopsis Sequence Match ( AT5G65260.1 )
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Arabidopsis Description

PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.