CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43491	Soybean	nucleus	89.61	88.69
VIT_06s0009g02150.t01	Wine grape	cytosol	8.9	68.18
KRH66489	Soybean	mitochondrion	15.28	67.32
Solyc01g086980.2.1	Tomato	nucleus	46.74	46.94
GSMUA_Achr9P16060_001	Banana	golgi	45.1	42.76
CDY00789	Canola	nucleus	37.83	42.5
CDX73810	Canola	nucleus	38.28	42.43
Bra001462.1-P	Field mustard	nucleus	39.47	42.36
CDY52667	Canola	nucleus	37.39	42.0
AT3G12640.3	Thale cress	nucleus	40.5	41.24
CDY50537	Canola	nucleus	37.09	41.12
Bra038740.1-P	Field mustard	nucleus	37.39	40.91
TraesCS2A01G330100.3	Wheat	nucleus	38.58	37.85
TraesCS2B01G352200.2	Wheat	nucleus	38.43	37.81
HORVU2Hr1G081930.1	Barley	nucleus	38.28	37.28
TraesCS2D01G332600.2	Wheat	nucleus	37.83	36.85
Os08t0504600-01	Rice	nucleus	36.5	35.96
Os04t0472400-00	Rice	mitochondrion	5.04	35.79
Zm00001d031422_P006	Maize	nucleus	36.35	35.3
KXG26527	Sorghum	nucleus	36.8	34.88
Zm00001d052888_P004	Maize	nucleus	35.46	34.39
TraesCS7D01G243800.1	Wheat	nucleus	35.31	34.2
TraesCS7A01G245200.1	Wheat	nucleus	35.16	34.05
TraesCS7B01G146300.1	Wheat	nucleus	35.16	34.05
HORVU7Hr1G050300.3	Barley	nucleus	34.72	33.72
EES15409	Sorghum	nucleus	34.72	33.72
Zm00001d025673_P005	Maize	nucleus	34.87	33.29
Zm00001d003329_P003	Maize	nucleus	35.76	29.53
KRH10563	Soybean	nucleus	8.61	29.44
KRH34559	Soybean	nucleus	9.2	28.97
KRG92240	Soybean	nucleus	9.2	28.97
KRH43887	Soybean	nucleus	8.46	28.93
KRH59303	Soybean	nucleus	9.05	28.37
KRH43152	Soybean	nucleus	8.9	27.52

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EMBL:ACUP02009800	EnsemblPlantsGene:GLYMA_15G272900	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:I1MJM6	InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677	EnsemblPlants:KRH13922
ProteinID:KRH13922	ProteinID:KRH13922.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102
PANTHER:PTHR45275	InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002952EA2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:51030895..51037797

Molecular Weight (calculated)

74532.1 Da

IEP (calculated)

9.909

GRAVY (calculated)

-0.702

Length

674 amino acids

Sequence
(BLAST)

001: MGSDDRDGNR LIKANFSADG AVRLKESLME KLKEFMGDYT DDTLVDYVIV LLRNGRHKEQ ARNDLNVFLG ENSDSFVSWL WDHLDIYLDS YVQPEALLDE
101: APKKRFIAEV QAGEDDSQHL NSQSERGKSS KLSRSRHNKD WKGLMRGEAE SPSIRSSVVD NAHLELEANQ GPRSLSPKPP VQKKRGRADE QPRMKRDVVS
201: QVNIAAPRRL LQFAVRDAVA TSRTATGMSV EPSLKRLRSV VSTSAGDSSF VERPQRMQLA SRVSNPMATM IKAVAEAAED VIKSKPSGSV FDRLGRGIDT
301: SDDNRQLEDS YQHQEQHHLF HSQRTEYNGG YAANTTMAGH ETGYPSDSNS DNEGFNDINV MDHRVSGASQ IRPSVGNRGN DSLMVQYSVA KNVDDSLRQK
401: RNREQEQLAA SPNTSHKIVN ISVNVNTWKP PQHQVSREVT ELDGNITFYN ERGDPRSSTR LVKENASTLK VSNGNVLLEK FIQTSSNAAG RPSEDVDSRT
501: IFVSNVHFAA TKDGLSRHFN RFGDVLKVII VTDAATGQPK GAAYVEFMRK EAADNALSLD NTSFMSRILK VIKKSATPQE SAPAMAWPRI VKGSPFPSAR
601: FSRHPFPRGI PGVFRARPPI KLGARSMQWK RDAQGSGSDS SSSVNTGNVA APVGRGFTYI RTESKPEGSL GTTT

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.