Factsheet for Zm00001d031422_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15409	Sorghum	nucleus	89.34	89.34
Zm00001d052888_P004	Maize	nucleus	86.74	86.62
HORVU7Hr1G050300.3	Barley	nucleus	67.29	67.29
TraesCS7B01G146300.1	Wheat	nucleus	67.44	67.24
TraesCS7A01G245200.1	Wheat	nucleus	67.15	66.95
TraesCS7D01G243800.1	Wheat	nucleus	66.57	66.38
Os08t0504600-01	Rice	nucleus	64.41	65.35
VIT_06s0009g02150.t01	Wine grape	cytosol	7.93	62.5
VIT_10s0042g00630.t01	Wine grape	cytosol	3.46	53.33
VIT_05s0029g00530.t01	Wine grape	plastid	3.46	53.33
KRH66489	Soybean	mitochondrion	9.94	45.1
VIT_13s0064g01190.t01	Wine grape	nucleus	40.63	40.29
KRH43491	Soybean	nucleus	36.46	37.15
GSMUA_Achr9P16060_001	Banana	golgi	37.61	36.71
KRH13922	Soybean	nucleus	35.3	36.35
Solyc01g086980.2.1	Tomato	nucleus	34.73	35.92
Zm00001d025673_P005	Maize	nucleus	34.01	33.43
CDY52667	Canola	nucleus	28.39	32.83
CDY50537	Canola	nucleus	28.67	32.73
Bra038740.1-P	Field mustard	nucleus	28.82	32.47
CDX73810	Canola	nucleus	28.39	32.4
AT3G12640.3	Thale cress	nucleus	30.84	32.33
CDY00789	Canola	nucleus	27.67	32.0
Bra001462.1-P	Field mustard	nucleus	28.82	31.85
Zm00001d003329_P003	Maize	nucleus	33.14	28.19
Zm00001d037200_P004	Maize	extracellular, nucleus	8.21	28.08
Zm00001d044869_P001	Maize	nucleus	8.93	22.71
Zm00001d052198_P002	Maize	nucleus	8.65	22.56
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	3.31	22.33
Zm00001d018112_P004	Maize	nucleus	8.79	21.4

Protein Annotations

EntrezGene:100383360	Gene3D:3.30.70.330	MapMan:35.2	UniProt:A0A1D6KIM3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM02827.1
ProteinID:ONM02833.1	ProteinID:ONM02838.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45275	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000221B8DF	EnsemblPlantsGene:Zm00001d031422	EnsemblPlants:Zm00001d031422_P006
EnsemblPlants:Zm00001d031422_T006	SEG:seg	:	:	:	:

Description

RNA binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr1:+:189580903..189591158

Molecular Weight (calculated)

77089.5 Da

IEP (calculated)

9.036

GRAVY (calculated)

-0.837

Length

694 amino acids

Sequence
(BLAST)

001: MDEADDDART FKVGFTAAGE KQFRELVREK LRGFRRGLDD TLLDYVTIML QNGKRKDQAS MELHVFLGDD SAVFVSWLWE HLSLNMHLYV QAQEQTQVVK
101: DDEAPKEVSG KDKSSDMFPR SKCQTHSEHP IESSAATTRK RDKREWKGIG RAGNEKFPLR NVLTDILHGE EKKSQKSNEI RYPSSKQQNG RKRDRDDEPQ
201: QAKRDTSSRP MLGGGASRRL LQFAVRDAVK AVQPASTSAE PASKRLRSVV ATTSAENMRD RRSEKSQDYL NDRRSERSQD NSSDRRSERT RPMLQVQGAA
301: LALRAAAEAA ADSTKARSTG SVFKRLGQGN VVKQPSRSRE EKRDYADFEP VTTANEHGSD RYVNNEESEE EYRELTMADR VAGMNVDSGS EDDVDRDEGV
401: TRYQTSISHE DTFSSFAEKK TVSAQCSVEL ETDAIRPSSV NHEEQPVPSL TNTTSKAVSI SVDVNMVEPP SYETPKDVHV VEKPYVAPMN SNATSVATNT
501: KELGHAEVQK DSQRSAPSVP VSYSTSHPTV DADSRTLYVS NVHFAATKDS LSRHFNKFGA VLKVVIVTNA ATGQPTGSAY VEFLHKESAE RALSLNGTSF
601: MTRILKVVRR SSHEAAHFYG WPGIGRSSLY GRHGRMAYPR AVHPGGSFRG RAPMKAGARS LQWKREPSGT DSSAGAKNDM SVPFSCEQVL PPAT

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.