Factsheet for Zm00001d052888_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15409	Sorghum	nucleus	88.2	88.33
Zm00001d031422_P006	Maize	nucleus	86.62	86.74
HORVU7Hr1G050300.3	Barley	nucleus	67.34	67.44
TraesCS7B01G146300.1	Wheat	nucleus	67.34	67.24
TraesCS7A01G245200.1	Wheat	nucleus	67.19	67.1
TraesCS7D01G243800.1	Wheat	nucleus	66.33	66.24
Os08t0504600-01	Rice	nucleus	63.02	64.04
VIT_06s0009g02150.t01	Wine grape	cytosol	7.91	62.5
VIT_10s0042g00630.t01	Wine grape	cytosol	3.45	53.33
VIT_05s0029g00530.t01	Wine grape	plastid	3.45	53.33
KRH66489	Soybean	mitochondrion	10.22	46.41
VIT_13s0064g01190.t01	Wine grape	nucleus	40.29	40.0
GSMUA_Achr9P16060_001	Banana	golgi	38.42	37.55
KRH43491	Soybean	nucleus	34.96	35.68
Solyc01g086980.2.1	Tomato	nucleus	34.39	35.62
KRH13922	Soybean	nucleus	34.39	35.46
CDY50537	Canola	nucleus	28.2	32.24
CDY52667	Canola	nucleus	27.77	32.17
CDX73810	Canola	nucleus	28.06	32.07
Zm00001d025673_P005	Maize	nucleus	32.52	32.01
CDY00789	Canola	nucleus	27.48	31.83
Bra038740.1-P	Field mustard	nucleus	28.2	31.82
Bra001462.1-P	Field mustard	nucleus	28.63	31.69
AT3G12640.3	Thale cress	nucleus	29.78	31.27
Zm00001d037200_P004	Maize	extracellular, nucleus	8.2	28.08
Zm00001d003329_P003	Maize	nucleus	32.95	28.06
Zm00001d052198_P002	Maize	nucleus	8.78	22.93
Zm00001d044869_P001	Maize	nucleus	8.92	22.71
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	3.31	22.33
Zm00001d018112_P004	Maize	nucleus	8.92	21.75

Protein Annotations

EntrezGene:103654496	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:AQK58291.1	ProteinID:AQK58300.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677	UniProt:K7U4K0
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275	InterPro:PWI_dom
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000221A51A	EnsemblPlantsGene:Zm00001d052888
EnsemblPlants:Zm00001d052888_P004	EnsemblPlants:Zm00001d052888_T004	SEG:seg	:	:	:

Description

RNA binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr4:+:203494695..203511433

Molecular Weight (calculated)

77183.4 Da

IEP (calculated)

7.662

GRAVY (calculated)

-0.845

Length

695 amino acids

Sequence
(BLAST)

001: MGESDDDART FKVVFTTTGE EQFRELVREK LRGFRRGLDD TLVDYVTIML KNGKSKDHAS EELHVFLGDD TAVFISWLWG HLSSNMHLYV QPQERTREVK
101: DDEAPKEVSG REKSSDVLPR SKHQTHSGHT IESSEATSRR RSNREWKGIG RKGNEKFPLR NVLTDILHGE DKRSQKSNEV RPPPSKQQND RKRERDDETH
201: QTKKDSSSRS MLGDGASRRL LQFAVRDAVK AVQPTSTSAE PASKRLCSVV ATTSTEHMRD RRSERSQDYL NDRRSERSQD NLSDRRSERT RPMLQVHGAA
301: LALRAAAEAA ADSAKVRSTG SVFKRLGQGN VVKQPSRSRE EKRDYEDFEP VTIADEHDSD QYVNNEESEE ESGELTMADR VAGSGMYVDS SSEDDMDRDE
401: GITRYQTSLS HDDTFSPFAE KKTVSAPCSV ELETNAIRPS SVNDEEQPVP STPTASKAVA ISVDVNMVEP PSYATPKDVH VVEKPYVAPM NSNAASIATN
501: AKELGHAEVQ KDSQRSAPSV PVSYSTAHPM EDADSRTLYV NNVHFAATKD SLSRHFNKFG AVLKVVIVTN AATGQPTGSA YVEFLHKESA ERALSLNGTS
601: FMTRILKVVR RSSHEAAHFY GWPGSGRSSI YGRHGRMAYP RAVIPGGSFR GRAPMKAGAR SLQWKREPSG TDSSAGAKTD MSVAFSSEQV LPRAT

Best Arabidopsis Sequence Match ( AT3G12640.1 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.