CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13922	Soybean	nucleus	88.69	89.61
KRH66489	Soybean	mitochondrion	18.06	80.39
VIT_06s0009g02150.t01	Wine grape	cytosol	8.96	69.32
Solyc01g086980.2.1	Tomato	nucleus	48.02	48.73
CDY00789	Canola	nucleus	38.18	43.33
CDY52667	Canola	nucleus	38.18	43.33
GSMUA_Achr9P16060_001	Banana	golgi	44.93	43.04
CDX73810	Canola	nucleus	38.33	42.93
Bra001462.1-P	Field mustard	nucleus	39.35	42.68
AT3G12640.3	Thale cress	nucleus	41.26	42.45
Bra038740.1-P	Field mustard	nucleus	38.33	42.37
CDY50537	Canola	nucleus	37.74	42.27
TraesCS2A01G330100.3	Wheat	nucleus	39.06	38.72
TraesCS2B01G352200.2	Wheat	nucleus	38.91	38.69
Os04t0472400-00	Rice	mitochondrion	5.29	37.89
HORVU2Hr1G081930.1	Barley	nucleus	38.33	37.72
TraesCS2D01G332600.2	Wheat	nucleus	38.03	37.43
Os08t0504600-01	Rice	nucleus	36.86	36.7
Zm00001d031422_P006	Maize	nucleus	37.15	36.46
KXG26527	Sorghum	nucleus	37.44	35.87
TraesCS7D01G243800.1	Wheat	nucleus	35.98	35.2
EES15409	Sorghum	nucleus	35.68	35.01
Zm00001d052888_P004	Maize	nucleus	35.68	34.96
TraesCS7A01G245200.1	Wheat	nucleus	35.68	34.91
TraesCS7B01G146300.1	Wheat	nucleus	35.68	34.91
HORVU7Hr1G050300.3	Barley	nucleus	35.24	34.58
Zm00001d025673_P005	Maize	nucleus	35.39	34.14
KRH10563	Soybean	nucleus	8.66	29.95
KRH34559	Soybean	nucleus	9.4	29.91
KRG92240	Soybean	nucleus	9.4	29.91
Zm00001d003329_P003	Maize	nucleus	35.68	29.78
KRH43887	Soybean	nucleus	8.52	29.44
KRH59303	Soybean	nucleus	9.25	29.3
KRH43152	Soybean	nucleus	8.96	27.98

Protein Annotations

Gene3D:1.20.1390.10	EntrezGene:100817963	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02004867	EnsemblPlantsGene:GLYMA_08G153100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	UniProt:I1KTL3	InterPro:IPR000504	InterPro:IPR002483
InterPro:IPR012677	ProteinID:KRH43490.1	EnsemblPlants:KRH43491	ProteinID:KRH43491	ProteinID:KRH43491.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275	InterPro:PWI_dom	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002961068	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:11790566..11798156

Molecular Weight (calculated)

75459.2 Da

IEP (calculated)

9.831

GRAVY (calculated)

-0.750

Length

681 amino acids

Sequence
(BLAST)

001: MGSDDRDGNT LIKANFTADG AGRLKESVME KLKEFMGDYT DDTLVDYVIV LLRNGRRKEQ ARNDLNVFLG ENSYSFVSWL WDHLDMYLNL YVQPEALQDE
101: APKKKLTAEV QAGDDDSQHL NSQSERGKSS KLSRSRHNKD WKGLMKEEAE PPSIRSSVVD NAHLELEANH GPRSLSPKPP VQRKRGRADE QQRMKRDVVS
201: QVNIAAPRRL LQFAVRDAVA TSRTANSGMS VEPSLKRLRS VVSTSAGDSS LLERPPRMQL ASRVANPMAT VIKAVAEAAE DVIKSKPSGS VFDRLGRSMD
301: TLDDNTQLED SFQHQEQHHL FRSQKTEYNG QYAANMTMMG HETGYPSDSN SDNEGFDDIN VMDRRVSGAS QICPSAGNRG NDSLMVQYSV AKNVDDSLRQ
401: KRNREQEQLS TSSNTSHKIV NISVNVNAWK PPQHQEPREV TELDGNRTFY NERDPRSSTR PVKENANTLK VSNGNANPAL DVQKEFSKAH LTASGSNAAG
501: RPSEDVDSRT IFVSNVHFAA TKDGLSRHFN RFGEVLKVII VTDAATGQPK GAAYVEFMRK EAADNALSLD NTSFMSRILK VIKKSATTQE SAPAMAWPRI
601: VRGSPFPSAR FSRHPFPRGI PGAFRARPPI KLGARSMQWK RDAQGSDSSS SVNTGSVTAP VARGFTYIRT ESKPEGSLST T

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.