CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031422_P006	Maize	nucleus	89.34	89.34
Zm00001d052888_P004	Maize	nucleus	88.33	88.2
HORVU7Hr1G050300.3	Barley	nucleus	68.88	68.88
TraesCS7A01G245200.1	Wheat	nucleus	69.02	68.82
TraesCS7B01G146300.1	Wheat	nucleus	68.88	68.68
TraesCS7D01G243800.1	Wheat	nucleus	68.16	67.96
Os08t0504600-01	Rice	nucleus	66.57	67.54
VIT_06s0009g02150.t01	Wine grape	cytosol	7.93	62.5
VIT_05s0029g00530.t01	Wine grape	plastid	3.46	53.33
VIT_10s0042g00630.t01	Wine grape	cytosol	3.46	53.33
KRH66489	Soybean	mitochondrion	10.23	46.41
VIT_13s0064g01190.t01	Wine grape	nucleus	40.35	40.0
GSMUA_Achr9P16060_001	Banana	golgi	37.61	36.71
Solyc01g086980.2.1	Tomato	nucleus	35.16	36.36
KRH43491	Soybean	nucleus	35.01	35.68
KRH13922	Soybean	nucleus	33.72	34.72
KXG26527	Sorghum	nucleus	35.16	34.32
CDX73810	Canola	nucleus	28.67	32.73
CDY52667	Canola	nucleus	28.1	32.5
Bra001462.1-P	Field mustard	nucleus	29.39	32.48
CDY50537	Canola	nucleus	28.39	32.4
CDY00789	Canola	nucleus	27.95	32.33
Bra038740.1-P	Field mustard	nucleus	28.67	32.31
AT3G12640.3	Thale cress	nucleus	30.55	32.02
KXG30711	Sorghum	nucleus	8.65	28.3
EER88092	Sorghum	nucleus	8.07	27.59
KXG38899	Sorghum	nucleus	7.2	26.04

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EntrezGene:8055188	UniProt:C5YIU6	EnsemblPlants:EES15409	ProteinID:EES15409
ProteinID:EES15409.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45275	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3007G212300	SUPFAM:SSF54928	unigene:Sbi.3589	UniParc:UPI0001A87A41
RefSeq:XP_002445914.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:64106677..64115261

Molecular Weight (calculated)

77088.4 Da

IEP (calculated)

8.549

GRAVY (calculated)

-0.859

Length

694 amino acids

Sequence
(BLAST)

001: MDEADDELRT LKVGFTAAGE EQFRKLVAEK LRGFKRDVDH TLVEYVTIML KNGKRKDLAS KELRVFLGDD TAVFISWLWD HLSLNMYLYV QAQEQTQEVK
101: DDEAPKEVSG REKSSDVLPR SKCQTHSEHT VESSAASTRK RNKREWKGIG REGNEKFPLR NVLTDILHGE EKRSQKSNEI RHPPSKQQNG RKRDRDDEPQ
201: QTKRDVSSRP MLGGGASRRL LQFAVRDAVK AVQPTSTNAE PASKRLRSVV ATTSAENMHD RRSERSQDYL NDRRSERSQD NLSDRRSERT RPMLQVQGAA
301: LALRAAAEAA ADSTKVRSTG SVFKRLGQGN VVKQPSRSRD EKRDFEDFEP ATTADEHDSD RYVNNEESEE ESGELTMADR VAGMNVDSSS EDDMDRDEGI
401: TRYQTSLSHE DTFSPFAEKK TVSAQCSVEP ETDAIRPSSV NDKEQPVPSS TKTASKAVAI SVDVNMVEPS SYETPKDVHV VEKPYVTPMN SNATTLATNA
501: KEVGHAEAQK DSQRSAPSVP VSYSTAHPTE DADSRTLYVS NVHFAATKDS LSRHFNKFGA VLKVVIVTNA ATGQPTGSAY VEFLHKESAE RALSLNGTSF
601: MTRILKVVRR SSHEAAHFYG WPGSGRSSLY GRHGRMAYPR AVLPGGSFRG RAPMKAGARS LQWKREPSGT DSSAGAKTDM SVPFSSEQVL PPAT

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.