Factsheet for VIT_05s0029g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
peroxisome 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00630.t01	Wine grape	cytosol	95.56	95.56
VIT_06s0009g02150.t01	Wine grape	cytosol	97.78	50.0
VIT_04s0008g03030.t01	Wine grape	cytosol, mitochondrion, nucleus	33.33	7.98
VIT_00s1351g00010.t01	Wine grape	cytosol, nucleus, plastid	20.0	6.21
VIT_03s0017g01220.t01	Wine grape	nucleus	20.0	5.0
VIT_13s0064g01190.t01	Wine grape	nucleus	75.56	4.86
GSMUA_Achr9P16060_001	Banana	golgi	57.78	3.66
Os08t0504600-01	Rice	nucleus	53.33	3.51
EES15409	Sorghum	nucleus	53.33	3.46
Zm00001d031422_P006	Maize	nucleus	53.33	3.46
Zm00001d052888_P004	Maize	nucleus	53.33	3.45
HORVU7Hr1G050300.3	Barley	nucleus	51.11	3.31
TraesCS7B01G146300.1	Wheat	nucleus	51.11	3.3
TraesCS7D01G243800.1	Wheat	nucleus	51.11	3.3
TraesCS7A01G245200.1	Wheat	nucleus	51.11	3.3
KXG26527	Sorghum	nucleus	46.67	2.95
TraesCS2B01G352200.2	Wheat	nucleus	44.44	2.92
TraesCS2A01G330100.3	Wheat	nucleus	44.44	2.91
TraesCS2D01G332600.2	Wheat	nucleus	44.44	2.89
HORVU2Hr1G081930.1	Barley	nucleus	44.44	2.89
Zm00001d025673_P005	Maize	nucleus	44.44	2.83
Zm00001d003329_P003	Maize	nucleus	44.44	2.45
VIT_16s0039g02780.t01	Wine grape	nucleus, plasma membrane, plastid	2.22	1.04
VIT_04s0008g03040.t01	Wine grape	nucleus	2.22	0.22
VIT_00s0625g00040.t01	Wine grape	cytosol	0.0	0.0
Os04t0472400-00	Rice	mitochondrion	0.0	0.0

Protein Annotations

ArrayExpress:VIT_05s0029g00530	EMBL:FN594958	EnsemblPlants:VIT_05s0029g00530.t01	EnsemblPlantsGene:VIT_05s0029g00530	PANTHER:PTHR45275	ProteinID:CCB44304
ProteinID:CCB44304.1	UniParc:UPI0002108368	UniProt:F6GWE1	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5:+:15339871..15340519

Molecular Weight (calculated)

5044.3 Da

IEP (calculated)

11.524

GRAVY (calculated)

0.004

Length

45 amino acids

Sequence
(BLAST)

1: MRKEAARHAL SLDGTSFMSR ILKVVKRNST RQEAAPCNIL GFLLI

Best Arabidopsis Sequence Match ( AT3G12640.2 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.