Factsheet for VIT_04s0008g03040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09640_001	Banana	plastid	15.04	23.29
VIT_16s0039g02780.t01	Wine grape	nucleus, plasma membrane, plastid	3.54	16.67
VIT_00s0625g00040.t01	Wine grape	cytosol	4.2	15.57
VIT_03s0017g01220.t01	Wine grape	nucleus	5.31	13.33
VIT_06s0009g02150.t01	Wine grape	cytosol	2.43	12.5
VIT_13s0064g01190.t01	Wine grape	nucleus	18.81	12.14
VIT_00s1351g00010.t01	Wine grape	cytosol, nucleus, plastid	3.32	10.34
VIT_04s0008g03030.t01	Wine grape	cytosol, mitochondrion, nucleus	3.32	7.98
VIT_05s0029g00530.t01	Wine grape	plastid	0.22	2.22
VIT_10s0042g00630.t01	Wine grape	cytosol	0.22	2.22

Protein Annotations

Gene3D:1.20.1390.10	EntrezGene:100854295	wikigene:100854295	MapMan:35.2	ProteinID:CCB46678	ProteinID:CCB46678.1
UniProt:F6H2W7	EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006397	GO:GO:0008143	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0043488	GO:GO:1900364	InterPro:IPR002483	EntrezGene:LOC100854295	wikigene:LOC100854295	PFAM:PF01480
PANTHER:PTHR14738	InterPro:PWI_dom	InterPro:PWI_dom_sf	SUPFAM:SSF101233	UniParc:UPI000210A674	ArrayExpress:VIT_04s0008g03040
EnsemblPlantsGene:VIT_04s0008g03040	EnsemblPlants:VIT_04s0008g03040.t01	RefSeq:XP_003631779	RefSeq:XP_003631779.1	:	:

Description

No Description!

Coordinates

chr4:-:2524690..2527963

Molecular Weight (calculated)

49820.9 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.689

Length

452 amino acids

Sequence
(BLAST)

001: MGNPKSFKIP INSPLATTLK SSISHKLLEF LGNYTDDVLA EYITVLVCNG KHRNQARDDL EAFLGERSEE FVSWLWDLLL DYANQSNTSI VPLDPKGVTF
101: SSPHDNDADM EYRAKRSRNF HNHGTSNDDG SPVISTEGEE LRHPSTYAFY TLPDDTDFSE GFQRSAGFAA PSNDINTEKV SLLMSGNGMR SELEPVEDIY
201: DDFLAHGCSG KDSFSVMPAS GEERILYMDK YQKIVDSKAI DLPKKLFSPS KQPYPRRLQS SIADNPLPRQ TSSANAYGRS LSPKVVTAVS HQYDKSRGSV
301: WDRLGKPQKN TFERSKTVDA PGISIREQNG VFLDQSVPVL PSPTERHSKQ EAPGLGNGAY NSGKCKKLES GVSNTGKLNG ASNISRKRHF GESSTGPGNS
401: SVSLVDKGNM DVQYKETSGD SKKTKLAEEV SEATFAQVSG CFYVDAKFEF KK

Best Arabidopsis Sequence Match ( AT2G24350.1 )
(BLAST)

001: MTKAVDGLTF PMSRVSESAS RLKTIISDML PRFTDDYSDD LSEYVTVLVC NGKSQRQASE DLEAFLKEQS WKFVVCLWEL LVKYFSQSNS ASGPKTDVDF
101: GSNDTLIKQG LSSRKYDDYD CKAADGTNSM NEQLISVTAP IDDIEAPVSP KVEKMKMSRQ ELIDSPCTRA RRRKKENWNS SGYSRKVLRS VIVSATQQPC
201: DRNPAKYEKS MNERSRTLKK RPYSPERELD SRFAPSGRAV SARYHDASLH QETEPHVSVW DRLGRASSEC VLDTESRTLS KFGIQTRETK VHQQHGPVFP
301: AAYSEQHSEI FQREVLAVGY RHRVPQFDKD RKPKSETITS TEPHIAYNLS RKRRYGMVSP NSGEFSYVPQ YKQAEQDFEK PSLLSHQSTK QDIFSEIKNV
401: KEKMQELELR IIQSKQLKKQ KVEERKPSPQ SGESQYQEDV SESRVIHVTN VYYAAKKEAI SMFFSSKCGA VQNVIVVTDP VTRHPKGTAF VTFATKESVG
501: KAVALSGTMF YSRPIKVRMH VIASGVVSAA PQIVTGS

Arabidopsis Description

At2g24350 [Source:UniProtKB/TrEMBL;Acc:Q0WPW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.