Factsheet for VIT_13s0064g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g02150.t01	Wine grape	cytosol	10.14	80.68
VIT_05s0029g00530.t01	Wine grape	plastid	4.86	75.56
VIT_10s0042g00630.t01	Wine grape	cytosol	4.71	73.33
GSMUA_Achr9P16060_001	Banana	golgi	49.14	48.38
TraesCS2B01G352200.2	Wheat	nucleus	43.14	44.09
TraesCS2A01G330100.3	Wheat	nucleus	43.0	43.81
TraesCS2D01G332600.2	Wheat	nucleus	43.0	43.5
HORVU2Hr1G081930.1	Barley	nucleus	42.86	43.35
KXG26527	Sorghum	nucleus	42.14	41.49
Os04t0472400-00	Rice	mitochondrion	5.57	41.05
Os08t0504600-01	Rice	nucleus	39.71	40.64
Zm00001d031422_P006	Maize	nucleus	40.29	40.63
EES15409	Sorghum	nucleus	40.0	40.35
Zm00001d052888_P004	Maize	nucleus	40.0	40.29
Zm00001d025673_P005	Maize	nucleus	40.0	39.66
TraesCS7A01G245200.1	Wheat	nucleus	38.86	39.08
TraesCS7B01G146300.1	Wheat	nucleus	38.71	38.94
HORVU7Hr1G050300.3	Barley	nucleus	38.43	38.76
TraesCS7D01G243800.1	Wheat	nucleus	38.29	38.51
Zm00001d003329_P003	Maize	nucleus	40.71	34.93
VIT_03s0017g01220.t01	Wine grape	nucleus	7.71	30.0
VIT_04s0008g03030.t01	Wine grape	cytosol, mitochondrion, nucleus	8.0	29.79
VIT_00s0625g00040.t01	Wine grape	cytosol	5.0	28.69
VIT_00s1351g00010.t01	Wine grape	cytosol, nucleus, plastid	5.57	26.9
VIT_04s0008g03040.t01	Wine grape	nucleus	12.14	18.81
VIT_16s0039g02780.t01	Wine grape	nucleus, plasma membrane, plastid	2.57	18.75

Protein Annotations

Gene3D:1.20.1390.10	EntrezGene:100855398	wikigene:100855398	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CCB49492
ProteinID:CCB49492.1	UniProt:F6HBB3	EMBL:FN595509	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677	EntrezGene:LOC100855398	wikigene:LOC100855398	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275	InterPro:PWI_dom	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC56722	UniParc:UPI0001984AE1	ArrayExpress:VIT_13s0064g01190
EnsemblPlantsGene:VIT_13s0064g01190	EnsemblPlants:VIT_13s0064g01190.t01	unigene:Vvi.3098	RefSeq:XP_003633575	RefSeq:XP_003633575.1	SEG:seg

Description

No Description!

Coordinates

chr13:-:23074380..23089273

Molecular Weight (calculated)

77253.2 Da

IEP (calculated)

9.804

GRAVY (calculated)

-0.810

Length

700 amino acids

Sequence
(BLAST)

001: MEGADRMDDR TFRVNFSGDG AARLRERVKE KLKEFMGDYT DDTLVEYVIV LLRNGRRKEE ARNELNVFLG DDSHSFVSWL WDHLDSHLQL YVLPQESYPD
101: EIAETKHTLG EHTERNDSLH LDSESERGNS LRSRSRHNRE WKGLARDGAE PPPLRSSEDD HVQTEEKTHR KVGHAKRSLS PKHPNQKKRN RPDDLKQAKR
201: EVVSQATINA PRRLLQFAVR DAVATSRPSN LAAEPKLKRL RSVVSTSTGD SSLDDRPQRL QSVARMPSAM ATAIKAVAEA AEDVIKVRSS GNVFDRLGRG
301: PRGMDLSEVS DQQAGFRETG TEDGGYEDFK QIPEKTRSTH LQRSAYSEHY AGNVTMLESE TGLASDSASD NEGYDDVNLM GRRIMDVSQS GTTGGNKGDD
401: SLMVQYSVAK NADEGMRTMR SIDQGQPSAV ANTSRKIVNI SVNVNTWKPP AHYQGPREVE EVDGQKPVQG NETGTGKSGV RLMKANGNPV SVGNGNAKPA
501: VDTQRESQKM QPSAPGSYST GRPLEDADSR TIFVNNVHFA ATKDSLSRHF NKFGEVVKVI IVTDAATGQP KGSAYVEFMR KEAAEHALSL DGTSFMSRIL
601: KVVKRSSTHQ EAAPGMSWPR IARGSPFAAA RFARVPFQRG IPGAFRARLP VKLGARSLQW KRDAQPTLAE SGAPASNNSV PSPTARSLTY VRTEPKPDGN

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.