Factsheet for GSMUA_Achr9P16060_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g02150.t01	Wine grape	cytosol	8.02	64.77
VIT_10s0042g00630.t01	Wine grape	cytosol	3.66	57.78
VIT_05s0029g00530.t01	Wine grape	plastid	3.66	57.78
KRH66489	Soybean	mitochondrion	12.24	56.86
VIT_13s0064g01190.t01	Wine grape	nucleus	48.38	49.14
Os04t0472400-00	Rice	mitochondrion	6.19	46.32
KRH13922	Soybean	nucleus	42.76	45.1
KRH43491	Soybean	nucleus	43.04	44.93
Solyc01g086980.2.1	Tomato	nucleus	40.23	42.62
TraesCS2A01G330100.3	Wheat	nucleus	39.66	41.05
HORVU2Hr1G081930.1	Barley	nucleus	39.94	41.04
TraesCS2D01G332600.2	Wheat	nucleus	39.8	40.9
TraesCS2B01G352200.2	Wheat	nucleus	39.38	40.88
KXG26527	Sorghum	nucleus	38.54	38.54
Zm00001d052888_P004	Maize	nucleus	37.55	38.42
Zm00001d025673_P005	Maize	nucleus	37.97	38.24
Os08t0504600-01	Rice	nucleus	36.71	38.16
Zm00001d031422_P006	Maize	nucleus	36.71	37.61
EES15409	Sorghum	nucleus	36.71	37.61
TraesCS7A01G245200.1	Wheat	nucleus	36.57	37.36
HORVU7Hr1G050300.3	Barley	nucleus	36.43	37.32
TraesCS7D01G243800.1	Wheat	nucleus	36.43	37.21
TraesCS7B01G146300.1	Wheat	nucleus	36.43	37.21
AT3G12640.3	Thale cress	nucleus	33.33	35.8
CDY00789	Canola	nucleus	29.82	35.33
CDY52667	Canola	nucleus	29.68	35.17
CDX73810	Canola	nucleus	29.96	35.03
Bra001462.1-P	Field mustard	nucleus	30.8	34.87
CDY50537	Canola	nucleus	29.82	34.87
Bra038740.1-P	Field mustard	nucleus	29.96	34.58
Zm00001d003329_P003	Maize	nucleus	37.41	32.6
GSMUA_Achr2P22250_001	Banana	nucleus	8.72	28.7
GSMUA_Achr6P10340_001	Banana	nucleus	8.3	27.31
GSMUA_Achr3P21300_001	Banana	nucleus	8.02	26.39
GSMUA_AchrUn_...	Banana	nucleus	7.59	25.96
GSMUA_Achr4P09640_001	Banana	plastid	8.02	19.52

Protein Annotations

EnsemblPlants:GSMUA_Achr9P16060_001	EnsemblPlants:GSMUA_Achr9T16060_001	EnsemblPlantsGene:GSMUA_Achr9G16060_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45275	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002958DF6	UniProt:M0U0R3	MapMan:35.2	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G16060_001]

Coordinates

chr9:+:10766141..10772239

Molecular Weight (calculated)

79856.5 Da

IEP (calculated)

9.398

GRAVY (calculated)

-0.619

Length

711 amino acids

Sequence
(BLAST)

001: MTCIKYLIIL VPIFDCLRWF PGYLKYLWSF TILFNKSCYL FNIHLQEYVV VLLRNGRRKD EARKELNVFL GDDSATFVSW LWDHLSSNIC WYVQQEQSFP
101: HEVAKSNTSL NELSGRHNSQ QEHLAQNVLS DSGDVREKSS KVSRIHHSRE WKEAQDDHKI FPLRSVVTNI FRPEDRTHRP NNSRRSRSPR AQVQRKRNRD
201: DEHLLTKRDS ASHSVIDAPR RLLQFAVRDA VRTVQQLDSR NEPALKRLRS VVSTSTTDSL LEKRSQRITS GSRVPGALSM ALKAVAEAVE DVNKARCSSS
301: VFDRLGHDRI MTEPVNELSD TTAQEVEYRD SEDNNRVPEL DHSDHPSRSE YDEEFDGNLT ILDQETETAA PDYASNNDKH NIVKNVSLHD LGASQSASSA
401: KRENKSVIVE YSIAQEPDEI LRQRRLLDQE PFASSAAMTS NKTVNISVNV NTWKSPHYQV SRDATEVENR VAVGKSKNGV GNQNVRLPKE NDVSSAQNVK
501: AMELADVQQE SPKPASAQGS YTTGRPLEDG DSRTLFVGNA SICFVHFAAT KDTLSRHFNK FGDVLKVIII NDAATGQPTG SAYVEFLKKE SADLALSLNG
601: TSFMSRILKV VRRSSHEAAP MICWPRVSRA SSFASRLGRI PYPRVAGAFP LRLPIKTGAR SLQWKRDSSA IQPGEVAKSS LTSGNNILSP TARSLTYRRT
701: ESKSDGTSGT A

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.