Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00789 | Canola | nucleus | 71.0 | 78.33 |
| Bra001462.1-P | Field mustard | nucleus | 74.17 | 78.18 |
| CDX73810 | Canola | nucleus | 71.45 | 77.8 |
| CDY50537 | Canola | nucleus | 69.79 | 75.99 |
| Bra038740.1-P | Field mustard | nucleus | 70.69 | 75.97 |
| CDY52667 | Canola | nucleus | 68.28 | 75.33 |
| VIT_06s0009g02150.t01 | Wine grape | cytosol | 8.61 | 64.77 |
| KRH66489 | Soybean | mitochondrion | 11.78 | 50.98 |
| KRH43491 | Soybean | nucleus | 42.45 | 41.26 |
| Solyc01g086980.2.1 | Tomato | nucleus | 41.24 | 40.69 |
| KRH13922 | Soybean | nucleus | 41.24 | 40.5 |
| HORVU2Hr1G081930.1 | Barley | nucleus | 36.4 | 34.83 |
| Os04t0472400-00 | Rice | mitochondrion | 4.98 | 34.74 |
| TraesCS2A01G330100.3 | Wheat | nucleus | 35.65 | 34.35 |
| TraesCS2B01G352200.2 | Wheat | nucleus | 35.5 | 34.31 |
| TraesCS2D01G332600.2 | Wheat | nucleus | 35.65 | 34.1 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 35.8 | 33.33 |
| KXG26527 | Sorghum | nucleus | 35.5 | 33.05 |
| Zm00001d025673_P005 | Maize | nucleus | 34.89 | 32.72 |
| Os08t0504600-01 | Rice | nucleus | 31.87 | 30.85 |
| Zm00001d031422_P006 | Maize | nucleus | 32.33 | 30.84 |
| EES15409 | Sorghum | nucleus | 32.02 | 30.55 |
| TraesCS7A01G245200.1 | Wheat | nucleus | 31.72 | 30.17 |
| TraesCS7B01G146300.1 | Wheat | nucleus | 31.57 | 30.03 |
| TraesCS7D01G243800.1 | Wheat | nucleus | 31.57 | 30.03 |
| HORVU7Hr1G050300.3 | Barley | nucleus | 31.42 | 29.97 |
| Zm00001d052888_P004 | Maize | nucleus | 31.27 | 29.78 |
| Zm00001d003329_P003 | Maize | nucleus | 34.29 | 27.82 |
| AT5G65260.1 | Thale cress | nucleus | 8.46 | 25.45 |
| AT5G10350.1 | Thale cress | nucleus | 7.85 | 23.96 |
| AT5G51120.2 | Thale cress | nucleus | 9.06 | 22.64 |
Protein Annotations
| Gene3D:1.20.1390.10 | Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:820444 | ProteinID:ANM63892.1 | ProteinID:ANM63893.1 |
| ArrayExpress:AT3G12640 | EnsemblPlantsGene:AT3G12640 | RefSeq:AT3G12640 | TAIR:AT3G12640 | RefSeq:AT3G12640-TAIR-G | EnsemblPlants:AT3G12640.3 |
| Unigene:At.42987 | ProteinID:BAB02407.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| InterPro:IPR000504 | InterPro:IPR002483 | InterPro:IPR012677 | RefSeq:NP_001325953.1 | RefSeq:NP_001325954.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF01480 | PFscan:PS50102 | PANTHER:PTHR45275 | InterPro:PWI_dom | UniProt:Q9LTX1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A19DC | SEG:seg |
Description
RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
Coordinates
chr3:+:4014059..4017675
Molecular Weight (calculated)
73085.8 Da
IEP (calculated)
9.932
GRAVY (calculated)
-0.814
Length
662 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.