Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G243800.1 | Wheat | nucleus | 97.99 | 97.99 |
| TraesCS7A01G245200.1 | Wheat | nucleus | 97.7 | 97.7 |
| HORVU7Hr1G050300.3 | Barley | nucleus | 95.4 | 95.68 |
| Os08t0504600-01 | Rice | nucleus | 71.98 | 73.25 |
| EES15409 | Sorghum | nucleus | 68.68 | 68.88 |
| Zm00001d031422_P006 | Maize | nucleus | 67.24 | 67.44 |
| Zm00001d052888_P004 | Maize | nucleus | 67.24 | 67.34 |
| VIT_06s0009g02150.t01 | Wine grape | cytosol | 7.76 | 61.36 |
| VIT_10s0042g00630.t01 | Wine grape | cytosol | 3.3 | 51.11 |
| VIT_05s0029g00530.t01 | Wine grape | plastid | 3.3 | 51.11 |
| KRH66489 | Soybean | mitochondrion | 10.49 | 47.71 |
| VIT_13s0064g01190.t01 | Wine grape | nucleus | 38.94 | 38.71 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 37.21 | 36.43 |
| KRH43491 | Soybean | nucleus | 34.91 | 35.68 |
| TraesCS2B01G352200.2 | Wheat | nucleus | 34.91 | 35.47 |
| Solyc01g086980.2.1 | Tomato | nucleus | 34.05 | 35.32 |
| KRH13922 | Soybean | nucleus | 34.05 | 35.16 |
| AT3G12640.3 | Thale cress | nucleus | 30.03 | 31.57 |
| CDY52667 | Canola | nucleus | 27.16 | 31.5 |
| Bra038740.1-P | Field mustard | nucleus | 27.87 | 31.49 |
| CDY50537 | Canola | nucleus | 27.44 | 31.41 |
| CDY00789 | Canola | nucleus | 26.87 | 31.17 |
| CDX73810 | Canola | nucleus | 26.87 | 30.76 |
| Bra001462.1-P | Field mustard | nucleus | 27.73 | 30.73 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 8.62 | 28.71 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 9.05 | 25.61 |
| TraesCS2B01G290800.2 | Wheat | nucleus | 18.82 | 20.34 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G146300.1 | EnsemblPlantsGene:TraesCS7B01G146300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45275 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.2 |
Description
No Description!
Coordinates
chr7B:+:190794296..190801133
Molecular Weight (calculated)
77359.4 Da
IEP (calculated)
7.150
GRAVY (calculated)
-0.886
Length
696 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAADLAADG RIFKADFTDA GAYQLRERMR EKLREFEGSP EDSIADYVIV LLRNGKRKDQ ARKELHIFLG VDDSALFISW LWDHLSLNLH LYVQTQEQEV
101: ENKDDEIPKE LSGRHKSPEV YARRDQTPLE HTSESNTTIR SRNKRDWKGT GREGNRNFPL RSVLTDILHG EEKKLQKSTE IRQPPSSNQR NGRKRDREDE
201: PQQTKRELPS RPVLGASRRL LQFAVRDAVK AVQQTSSSME PSSKRLRSVV STVSTDNQHG KMSERSTDSL HDRRSERATD SLHDRRSERS ADNPNDKRVE
301: RKRQILQVPG AALALRAAAE AAADSSKARS TGSVFSRLGQ GNAVNKPSRS REEKRGYDDF EPATTLDDHD SDQHDNDEQI SGDLEIADGE DEMNVDTTSD
401: EDADIDDEMT RYQSSDSHVV EKKYTLTKCS AEPETNKTKH SSLTYEEQPV SSAPIRASKT VAVPVNPISV EPPNFGTPKD VHVVEKPDIT PMNANVASPA
501: INVKELGHGE VQKDSQRSAT SVSSSYSTAH PTEDADSRTL YVSNVHFAAT KDSLSRHFNK FGAVLKVVIV TNAATGQPTG SAYVEFLHTE SAERALSLNG
601: TSFMTRILKV VRRSSHEAAH FYGWPGSGRS SYARGRMAYP RGVLPGSSFR GHTPMKAGAR SFQWKREPSG TESNAGAKPD MSVALASAEQ VLPPAT
101: ENKDDEIPKE LSGRHKSPEV YARRDQTPLE HTSESNTTIR SRNKRDWKGT GREGNRNFPL RSVLTDILHG EEKKLQKSTE IRQPPSSNQR NGRKRDREDE
201: PQQTKRELPS RPVLGASRRL LQFAVRDAVK AVQQTSSSME PSSKRLRSVV STVSTDNQHG KMSERSTDSL HDRRSERATD SLHDRRSERS ADNPNDKRVE
301: RKRQILQVPG AALALRAAAE AAADSSKARS TGSVFSRLGQ GNAVNKPSRS REEKRGYDDF EPATTLDDHD SDQHDNDEQI SGDLEIADGE DEMNVDTTSD
401: EDADIDDEMT RYQSSDSHVV EKKYTLTKCS AEPETNKTKH SSLTYEEQPV SSAPIRASKT VAVPVNPISV EPPNFGTPKD VHVVEKPDIT PMNANVASPA
501: INVKELGHGE VQKDSQRSAT SVSSSYSTAH PTEDADSRTL YVSNVHFAAT KDSLSRHFNK FGAVLKVVIV TNAATGQPTG SAYVEFLHTE SAERALSLNG
601: TSFMTRILKV VRRSSHEAAH FYGWPGSGRS SYARGRMAYP RGVLPGSSFR GHTPMKAGAR SFQWKREPSG TESNAGAKPD MSVALASAEQ VLPPAT
001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND
Arabidopsis Description
RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.