Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G146300.1 | Wheat | nucleus | 95.68 | 95.4 |
| TraesCS7D01G243800.1 | Wheat | nucleus | 95.25 | 94.97 |
| TraesCS7A01G245200.1 | Wheat | nucleus | 95.1 | 94.83 |
| Os08t0504600-01 | Rice | nucleus | 72.05 | 73.1 |
| EES15409 | Sorghum | nucleus | 68.88 | 68.88 |
| Zm00001d052888_P004 | Maize | nucleus | 67.44 | 67.34 |
| Zm00001d031422_P006 | Maize | nucleus | 67.29 | 67.29 |
| VIT_06s0009g02150.t01 | Wine grape | cytosol | 7.78 | 61.36 |
| VIT_10s0042g00630.t01 | Wine grape | cytosol | 3.31 | 51.11 |
| VIT_05s0029g00530.t01 | Wine grape | plastid | 3.31 | 51.11 |
| KRH66489 | Soybean | mitochondrion | 10.52 | 47.71 |
| VIT_13s0064g01190.t01 | Wine grape | nucleus | 38.76 | 38.43 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 37.32 | 36.43 |
| Solyc01g086980.2.1 | Tomato | nucleus | 34.15 | 35.32 |
| KRH43491 | Soybean | nucleus | 34.58 | 35.24 |
| KRH13922 | Soybean | nucleus | 33.72 | 34.72 |
| HORVU2Hr1G081930.1 | Barley | nucleus | 34.29 | 34.39 |
| CDY52667 | Canola | nucleus | 27.38 | 31.67 |
| Bra038740.1-P | Field mustard | nucleus | 27.95 | 31.49 |
| AT3G12640.3 | Thale cress | nucleus | 29.97 | 31.42 |
| CDY50537 | Canola | nucleus | 27.52 | 31.41 |
| CDY00789 | Canola | nucleus | 26.8 | 31.0 |
| CDX73810 | Canola | nucleus | 26.66 | 30.43 |
| Bra001462.1-P | Field mustard | nucleus | 27.52 | 30.41 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 9.22 | 29.49 |
| HORVU1Hr1G055400.2 | Barley | cytosol, golgi, nucleus | 7.06 | 21.12 |
| HORVU2Hr1G066510.2 | Barley | mitochondrion | 18.59 | 18.86 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G050300.3 | EnsemblPlantsGene:HORVU7Hr1G050300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45275 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B4786AD | UniProt:A0A287WFW5 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:180597079..180615545
Molecular Weight (calculated)
76970.0 Da
IEP (calculated)
7.681
GRAVY (calculated)
-0.869
Length
694 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAADLATDG RIFKADFTDS GAYQLRERMR EKLREFKGSA EVADYVIVLL RNGKREDEAR KELRIFLGVD DSALFISWLW DHLSLNLHLY VQTQEQAVEN
101: KDDEIPKELS GRHKSPEVHT RRDQTPLEHT SESNATTRSR NKRDWKGTGR EGNRNFPLRS VLTDILHGEE KKLQKSTEIR QPPSSNQRNG RKRDREDEPQ
201: QTKRELPSRP VLGASRRLLQ FAVRDAVKAV QQTSSSTEPS SKRLRSVVNT LSTDNLHGKI SQRSTDSLHD SRSERATDSL HDRRSERSAD NPNDKRVERK
301: RQILQVPGAA LALRAAAEAA ADSSKARSTG SVFSRLGQGN AVNQPSRSRE EKRGYDDFEP VTALDDHDSD QHDNDEQISG DLEIADGEDE MNVDTTSDED
401: VGIDDEMTRY QSSDSHVVEK KYTLTKCSAE PENNKTKHSS LTYEEQPVSS APIRASKTVA VPVSPISVEP PNFGTPKDVH VVEKPDITPM NANVASPAIN
501: VKELGHGEVQ KDSQRSATSV SSSYSTAHPT EDADSRTLYV SNVHFAATKD SLSRHFNKFG AVLKVVIVTN AATGQPTGSA YVEFLHTESA ERALSLNGTS
601: FMTRILKVVR RSSHEAAHFY GWPGSGRSSY ARGRMAYPRG VLPGSSFRGR TPMKAGARSF QWKREPSGTD SNAGAKPDMS VALSSAEQVL PPAT
101: KDDEIPKELS GRHKSPEVHT RRDQTPLEHT SESNATTRSR NKRDWKGTGR EGNRNFPLRS VLTDILHGEE KKLQKSTEIR QPPSSNQRNG RKRDREDEPQ
201: QTKRELPSRP VLGASRRLLQ FAVRDAVKAV QQTSSSTEPS SKRLRSVVNT LSTDNLHGKI SQRSTDSLHD SRSERATDSL HDRRSERSAD NPNDKRVERK
301: RQILQVPGAA LALRAAAEAA ADSSKARSTG SVFSRLGQGN AVNQPSRSRE EKRGYDDFEP VTALDDHDSD QHDNDEQISG DLEIADGEDE MNVDTTSDED
401: VGIDDEMTRY QSSDSHVVEK KYTLTKCSAE PENNKTKHSS LTYEEQPVSS APIRASKTVA VPVSPISVEP PNFGTPKDVH VVEKPDITPM NANVASPAIN
501: VKELGHGEVQ KDSQRSATSV SSSYSTAHPT EDADSRTLYV SNVHFAATKD SLSRHFNKFG AVLKVVIVTN AATGQPTGSA YVEFLHTESA ERALSLNGTS
601: FMTRILKVVR RSSHEAAHFY GWPGSGRSSY ARGRMAYPRG VLPGSSFRGR TPMKAGARSF QWKREPSGTD SNAGAKPDMS VALSSAEQVL PPAT
001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ DFSSDRGRLG SSVNVSHPST YLGNRINNPN SLQHRLVDDS KRVKGTNYQN RLPEVATKHK TASFSGNIDT GKTVKLEEQR
401: KIPDVGLQRY MDEGRLVSSE ATTQLSTQKI LGDTIGNGNV KPAASVKEES TTNKSVPGTL STTRPLEDAS SRTIFVANVH FGATKDSLSR HFNKFGEVLK
501: AFIVTDPATG QPSGSAYIEF TRKEAAENAL SLDGTSFMSR ILKIVKGSNG QNQEAASSMS WSRGGRFTRA PSYFRGGAVR GRSVVRGGGR SMQWKRDSAD
601: TGNNNNVAPN NARSLTYVRA ESKSDGVAND
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ DFSSDRGRLG SSVNVSHPST YLGNRINNPN SLQHRLVDDS KRVKGTNYQN RLPEVATKHK TASFSGNIDT GKTVKLEEQR
401: KIPDVGLQRY MDEGRLVSSE ATTQLSTQKI LGDTIGNGNV KPAASVKEES TTNKSVPGTL STTRPLEDAS SRTIFVANVH FGATKDSLSR HFNKFGEVLK
501: AFIVTDPATG QPSGSAYIEF TRKEAAENAL SLDGTSFMSR ILKIVKGSNG QNQEAASSMS WSRGGRFTRA PSYFRGGAVR GRSVVRGGGR SMQWKRDSAD
601: TGNNNNVAPN NARSLTYVRA ESKSDGVAND
Arabidopsis Description
RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.